View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10218_high_17 (Length: 239)
Name: NF10218_high_17
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_high_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 43511688 - 43511926
Alignment:
| Q |
1 |
aaacacgttgaaatcttcgagatcagagctttgtgaaaaacttcatcttgataacaacgatctggttccttgggttttgattttcttaaaacagagcatg |
100 |
Q |
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| T |
43511688 |
aaacacgttgaaatcttcgagatcagagctttgtgaaaaacttcatcgtgataacaacgatctggttccttgggttttgattttcttaaaacagagcatg |
43511787 |
T |
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| Q |
101 |
aactgaaacgacaccgtttaaacgatcttcatgtttctgaaacatgaagnnnnnnnnnatgatgagattgaggaaag--tgnnnnnnnnngtaagaagga |
198 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |||||||||| |
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| T |
43511788 |
aactgaaacgacaccgtttaaacgatcttcatgtttatgaaacatgaagtttttttttatgatgagattgaggaaagtatttttttttttgtaagaagga |
43511887 |
T |
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| Q |
199 |
atctctagcacagtgaaatgaagtgtattaataactttttt |
239 |
Q |
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| T |
43511888 |
atctctagcacagtgaaatgaa--gtattaataactttttt |
43511926 |
T |
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