View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10218_high_21 (Length: 227)

Name: NF10218_high_21
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10218_high_21
NF10218_high_21
[»] chr1 (9 HSPs)
chr1 (15-211)||(51407539-51407736)
chr1 (22-80)||(51756737-51756795)
chr1 (22-80)||(51762919-51762977)
chr1 (24-80)||(51782805-51782861)
chr1 (22-80)||(51858612-51858670)
chr1 (19-80)||(51381439-51381500)
chr1 (34-80)||(51832379-51832425)
chr1 (22-80)||(51854953-51855011)
chr1 (19-80)||(51221200-51221261)
[»] chr6 (4 HSPs)
chr6 (22-80)||(4182988-4183046)
chr6 (22-80)||(4743832-4743890)
chr6 (34-74)||(19119075-19119115)
chr6 (34-74)||(19126369-19126409)
[»] chr3 (13 HSPs)
chr3 (19-80)||(2631363-2631424)
chr3 (37-80)||(13498230-13498273)
chr3 (34-80)||(2459281-2459327)
chr3 (34-80)||(2696731-2696777)
chr3 (34-76)||(3754610-3754652)
chr3 (34-76)||(4142133-4142175)
chr3 (34-76)||(4157943-4157985)
chr3 (19-80)||(2492088-2492149)
chr3 (35-80)||(2644362-2644407)
chr3 (35-80)||(2659152-2659197)
chr3 (19-80)||(7324415-7324476)
chr3 (34-74)||(23197024-23197064)
chr3 (24-80)||(43991966-43992022)
[»] chr5 (5 HSPs)
chr5 (34-80)||(23769645-23769691)
chr5 (34-80)||(23819493-23819539)
chr5 (34-80)||(23766861-23766907)
chr5 (34-80)||(23816709-23816755)
chr5 (36-76)||(3181727-3181767)
[»] chr2 (2 HSPs)
chr2 (34-80)||(36577372-36577418)
chr2 (35-80)||(33020319-33020364)
[»] scaffold0044 (1 HSPs)
scaffold0044 (35-76)||(89153-89194)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 51407539 - 51407736
Alignment:
Q  15 atgaatgtgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatccatctaatcctcgtttgttctctatttcggtgcaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51407539 atgaatgtgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatccatctaatcctcgtttgttctctatttcggtgcaaa 51407638  T
Q  115 aagaaggatgagggatcttt-gaacgagaatacgtgaacattggccttgggatatgttgtggaaccggaattttttggtgtgggaagaggctttagtg 211  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51407639 aagaaggatgagcgatctttagaacgagaatatgtgaacattggccttgggatatgttgtggagccggaattttttggtgtgggaagaggctttagtg 51407736  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 51756737 - 51756795
Alignment:
Q  22 tgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||    
T  51756737 tgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcca 51756795  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 51762919 - 51762977
Alignment:
Q  22 tgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||    
T  51762919 tgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcca 51762977  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 51782861 - 51782805
Alignment:
Q  24 aggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    |||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||||    
T  51782861 aggaacacttaataatttattccaagattgttcatttccatattccttcataatcca 51782805  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 51858670 - 51858612
Alignment:
Q  22 tgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||||||||||||||||||||||||||| | | |||| |||||||||||||| |||||    
T  51858670 tgaggaacacttaacaatttagtccaagattctacatttccatattccttcatgatcca 51858612  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 51381439 - 51381500
Alignment:
Q  19 atgtgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    |||| ||||| ||| ||||||||||||||||||| |||||| |||||||| |||||||||||    
T  51381439 atgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatcca 51381500  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 51832425 - 51832379
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||||||||||||||| |||||||| |||||||| ||||| |||||    
T  51832425 aacaatttagtccaagattgttcatttccatattctttcattatcca 51832379  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 51855011 - 51854953
Alignment:
Q  22 tgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    |||||||||| |||||||||||||||||| | | |||| |||||||| ||||| |||||    
T  51855011 tgaggaacacataacaatttagtccaagattctacatttccatattctttcatgatcca 51854953  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 51221200 - 51221261
Alignment:
Q  19 atgtgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||||||||| | ||||||| |||||||||| | ||||||||| ||||| ||||| |||||    
T  51221200 atgtgaggaacccgtaacaatatagtccaagaattttcattcccgtattcattcattatcca 51221261  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 4182988 - 4183046
Alignment:
Q  22 tgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||    
T  4182988 tgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcca 4183046  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 4743832 - 4743890
Alignment:
Q  22 tgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||    
T  4743832 tgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcca 4743890  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 19119115 - 19119075
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcat 74  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcat 19119075  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 19126409 - 19126369
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcat 74  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcat 19126369  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 2631424 - 2631363
Alignment:
Q  19 atgtgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    |||| |||||||||  |||||||||||||||||| || ||| ||||||||||||||||||||    
T  2631424 atgtcaggaacactgcacaatttagtccaagactcttgatttccatattccttcataatcca 2631363  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 13498273 - 13498230
Alignment:
Q  37 aatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    |||||||||||||||| || ||| ||||||||||||||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatcca 13498230  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 2459327 - 2459281
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    |||||||| |||||||||| || ||| ||||||||||||||||||||    
T  2459327 aacaattttgtccaagactctttatttccatattccttcataatcca 2459281  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 2696731 - 2696777
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||||||| ||||||||| || ||| ||||||||||||||||||||    
T  2696731 aacaatttaatccaagactctttatttccatattccttcataatcca 2696777  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 3754652 - 3754610
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcataa 76  Q
    ||||||||||||||||||| || ||| ||||||||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataa 3754610  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 4142133 - 4142175
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcataa 76  Q
    ||||||||||||||||||| || ||| ||||||||||||||||    
T  4142133 aacaatttagtccaagactctttatttccatattccttcataa 4142175  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 4157943 - 4157985
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcataa 76  Q
    ||||||||||||||||||| || ||| ||||||||||||||||    
T  4157943 aacaatttagtccaagactctttatttccatattccttcataa 4157985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 2492149 - 2492088
Alignment:
Q  19 atgtgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    |||| |||||||||  |||||||||||||||||| |  ||| ||||| ||||||||||||||    
T  2492149 atgttaggaacactatacaatttagtccaagactctcgatttccatactccttcataatcca 2492088  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 2644362 - 2644407
Alignment:
Q  35 acaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    |||||||||||||||||| || ||| ||||| ||||||||||||||    
T  2644362 acaatttagtccaagactcttgatttccatactccttcataatcca 2644407  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 2659152 - 2659197
Alignment:
Q  35 acaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    |||||||||||||||||| || ||| ||||| ||||||||||||||    
T  2659152 acaatttagtccaagactcttgatttccatactccttcataatcca 2659197  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 7324415 - 7324476
Alignment:
Q  19 atgtgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    |||| |||||||||  |||||||||||||||||| || ||| || || ||||||||||||||    
T  7324415 atgttaggaacactatacaatttagtccaagactctttatttccgtagtccttcataatcca 7324476  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 23197064 - 23197024
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcat 74  Q
    ||||||||||||||||| | |||||| ||||||||||||||    
T  23197064 aacaatttagtccaagattcttcatttccatattccttcat 23197024  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 43992022 - 43991966
Alignment:
Q  24 aggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    |||||||||  ||||||| |||||||||| |  ||| ||||||||||||||||||||    
T  43992022 aggaacactatacaatttggtccaagactctatatttccatattccttcataatcca 43991966  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 23769645 - 23769691
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||    
T  23769645 aacaatttagtccaagacgctttattcccatattccttcataatcca 23769691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 23819493 - 23819539
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||    
T  23819493 aacaatttagtccaagacgctttattcccatattccttcataatcca 23819539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 23766861 - 23766907
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||||||||||||||||| || ||| |||||||| |||||||||||    
T  23766861 aacaatttagtccaagactctttatttccatattctttcataatcca 23766907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 23816709 - 23816755
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||||||||||||||||| || ||| |||||||| |||||||||||    
T  23816709 aacaatttagtccaagactctttatttccatattctttcataatcca 23816755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 3181767 - 3181727
Alignment:
Q  36 caatttagtccaagactgttcattcccatattccttcataa 76  Q
    ||||||| ||||||||| |||||| ||||||||||||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataa 3181727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 36577418 - 36577372
Alignment:
Q  34 aacaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||||||| ||||||||| || ||| ||||||||||||||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatcca 36577372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 33020364 - 33020319
Alignment:
Q  35 acaatttagtccaagactgttcattcccatattccttcataatcca 80  Q
    ||||| |||||||||||| || ||| ||||||||||||||||||||    
T  33020364 acaatctagtccaagactttttatttccatattccttcataatcca 33020319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 89194 - 89153
Alignment:
Q  35 acaatttagtccaagactgttcattcccatattccttcataa 76  Q
    |||||||||||||||||| || ||| ||||||||||||||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataa 89153  T

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