View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10218_high_22 (Length: 211)
Name: NF10218_high_22
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 25526668 - 25526853
Alignment:
| Q |
9 |
ggagcagagaagttatacaattgagtaagtattttgtgatgggtgtaggggccgttactcccgcatggccaaataaagcatttttgattcgctatttgag |
108 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25526668 |
ggagcaaagaagttatacaattgagta-gtattttgtgatgggtgtaggggccgttactcccgcatggccaaataaagcatttttgattcgctatttgag |
25526766 |
T |
|
| Q |
109 |
agcagcaccttgttctgacatattttacctctttcataaatatgagaaaatagcacagcagaaaaagtgattgatcactgtcaaagt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25526767 |
agcagcaccttgttctgacatattttacctctttcataaatatgagaaaatagcacagcagaaaaagtgattgatcactgtcaaagt |
25526853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University