View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10218_high_3 (Length: 479)
Name: NF10218_high_3
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_high_3 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 41972499 - 41972934
Alignment:
| Q |
18 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41972499 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaatccacaagagcggccaaatacaaagaggatgtaaacaacgt |
41972598 |
T |
|
| Q |
118 |
tagtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41972599 |
-agtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatcc |
41972697 |
T |
|
| Q |
218 |
attgccgtaactccacctatacattaataattaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacatattttgtca |
317 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41972698 |
attgccgtaactccacctatac-------attaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacatattttgtca |
41972790 |
T |
|
| Q |
318 |
aacacttaaatgggaaaatgagaatattgtacctaaaatgccaagatcatagccgaagattaagcctccaaatgctgcaatcatgcaagcgatgaacacc |
417 |
Q |
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||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41972791 |
aacacttcaat-ggaaaatgagaatattgtacctgaaatgccaagatcatagccgaagattaagcctccaaatgctgcaatcatgcaagcgatgaacacc |
41972889 |
T |
|
| Q |
418 |
ctaaaggtgagttttcccggatattctttttcagagccatgtgct |
462 |
Q |
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| T |
41972890 |
ctaaaggtgagttttcccggatattctttttcagagccatgtgct |
41972934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 1240866 - 1241305
Alignment:
| Q |
18 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
117 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1240866 |
cagagagcatggtaagatgtcttccaaagattctagttgcggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
1240965 |
T |
|
| Q |
118 |
tagtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaaga----atgg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1240966 |
tagtgtctgactgtcgaatttgcagtattgattatcggtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatgg |
1241065 |
T |
|
| Q |
214 |
atccattgccgtaactccacctatacattaataattaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacatatttt |
313 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1241066 |
atccattgccgtaactccacctatac-------attaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacata-ttt |
1241157 |
T |
|
| Q |
314 |
gtcaaacacttaaatgggaaaatgagaatattgtacctaaaatgccaagatcatagccgaagattaagcctccaaatgctgcaatcatgcaagcgatgaa |
413 |
Q |
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| ||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1241158 |
ggcaaacactt-aattggaaaatgagaatattgtacctgaaaggccaagatcatagccgaagattaagccttcaaatgctgcaatcatgcaagcgatgaa |
1241256 |
T |
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| Q |
414 |
caccctaaaggtgagttttcccggatattctttttcagagccatgtgct |
462 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1241257 |
caccctaaaggtgagttttcccggatattctttttcagagccatgtgct |
1241305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 42519087 - 42519537
Alignment:
| Q |
18 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42519087 |
cagagagcatggtaagacgtcttccaaagattctagttacagtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagt |
42519186 |
T |
|
| Q |
118 |
tagtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatcc |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| |
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| T |
42519187 |
tagtgtctgactgtcgaatttgcagtattgattatctgcaggcttaatgtttagctgcttagcataaacatctggaaagaacttcattaagaatggatcc |
42519286 |
T |
|
| Q |
218 |
attgccgtaactccacctatacattaataattaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacatattttgtca |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42519287 |
attgccgtaactccacctatac-------attaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtca |
42519379 |
T |
|
| Q |
318 |
aacacttaaatggga-------------aaatgagaatattgtacctaaaatgccaagatcatagccgaagattaagcctccaaatgctgcaatcatgca |
404 |
Q |
| |
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||||||||||||| | |||| |||||||||||||| |||||||||||||||| || ||||||||||||||| |||||||| ||||||| |
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| T |
42519380 |
aacacttaaatggaaaaaagaagaaaataaattagaatattgtacctgaaatgccaagatcataaccaaagattaagcctccacatgctgcagtcatgca |
42519479 |
T |
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| Q |
405 |
agcgatgaacaccctaaaggtgagttttcccggatattctttttcagagccatgtgct |
462 |
Q |
| |
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| |||||||||||||| ||||| |||||| |||||||||||| ||||||| |||||| |
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|
| T |
42519480 |
aatgatgaacaccctaatggtgaattttcctggatattcttttccagagccttgtgct |
42519537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 42550991 - 42550872
Alignment:
| Q |
25 |
catggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgttagtgtc |
124 |
Q |
| |
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|||||| ||||| |||||||| || |||||| |||||||| ||||| || || |||||||| ||||||||||||||||| |||||||| |||| || |
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| T |
42550991 |
catggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgtt |
42550892 |
T |
|
| Q |
125 |
tgactgtcgaatttgcagta |
144 |
Q |
| |
|
|| || |||||| ||||||| |
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|
| T |
42550891 |
tggctatcgaatctgcagta |
42550872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 213 - 462
Target Start/End: Original strand, 1 - 242
Alignment:
| Q |
213 |
gatccattgccgtaactccacctatacattaataattaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacatattt |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1 |
gatccattgccgtaactccacctatacattaat-------tgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacatattt |
93 |
T |
|
| Q |
313 |
tgtcaaacacttaaatgggaaaatgagaatattgtacctaaaatgccaagatcatagccgaagattaagcctccaaatgctgcaatcatgcaagcgatga |
412 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
94 |
tgtcaaacacttcaatgg-aaaatgagaatattgtacctgaaatgccaagatcatagccgaagattaagcctccaaatgctgcaatcatgcaagcgatga |
192 |
T |
|
| Q |
413 |
acaccctaaaggtgagttttcccggatattctttttcagagccatgtgct |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
193 |
acaccctaaaggtgagttttcccggatattctttttcagagccatgtgct |
242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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