View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10218_high_4 (Length: 437)

Name: NF10218_high_4
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10218_high_4
NF10218_high_4
[»] chr5 (10 HSPs)
chr5 (231-424)||(42637375-42637568)
chr5 (69-202)||(42637570-42637703)
chr5 (76-135)||(42629932-42629991)
chr5 (74-134)||(9575748-9575808)
chr5 (381-424)||(40545117-40545160)
chr5 (376-413)||(37512892-37512929)
chr5 (79-133)||(16487064-16487118)
chr5 (385-414)||(15807754-15807783)
chr5 (377-410)||(42629669-42629702)
chr5 (340-416)||(41859696-41859772)
[»] scaffold0129 (1 HSPs)
scaffold0129 (382-422)||(10484-10524)
[»] chr3 (1 HSPs)
chr3 (384-424)||(5162455-5162495)
[»] chr8 (1 HSPs)
chr8 (76-135)||(3368153-3368212)
[»] scaffold0134 (1 HSPs)
scaffold0134 (382-424)||(16252-16294)
[»] chr6 (2 HSPs)
chr6 (375-413)||(29131310-29131348)
chr6 (334-424)||(32744887-32744977)
[»] chr2 (1 HSPs)
chr2 (376-408)||(44937838-44937870)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 231 - 424
Target Start/End: Complemental strand, 42637568 - 42637375
Alignment:
Q  231 atacaatgaaaaggatctcgtgtcatttaacttgaccactgagatgtttgttacaacatctacaccgacaaacaggaatgatattcgttatggatattta 330  Q
    ||||||| ||||  |||||||||||||||||||||| ||||| |||||||| |||||||||| || |||||||| ||||||||||  |||| |||| |||    
T  42637568 atacaataaaaattatctcgtgtcatttaacttgactactgaaatgtttgtgacaacatctatactgacaaacacgaatgatattgattatagatactta 42637469  T
Q  331 gcagtgttaaatgggtcaattgcgttggtttcaaattttgcaaacacaacaacttttcacatatcaattttgggtgaagttgggatgaaggaat 424  Q
    ||| |||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||    
T  42637468 gcaatgttaaatcggtcaattgcgttgatttcgaattttgcaaacacaactacttttcacatatcaattttgggtgaagtcggggtgaaggaat 42637375  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 69 - 202
Target Start/End: Complemental strand, 42637703 - 42637570
Alignment:
Q  69 ttattctttgtgggagatatattgtctaaaaagcaactcttggagaaagcttcatgtagatatgcctgcatgttctccatataatgcggatggtcgtgta 168  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| | |||| | ||  |||| |||     
T  42637703 ttattctttgtgggagatatactgtctaaaaagcaactcttggagaaagcttgatgtagatatgccttcatcttctcgacataaagtgggcggtcatgtg 42637604  T
Q  169 tacatggatggaatgtgtcattggttgagtaaaa 202  Q
    |||||||||||| |||||||||||||||||||||    
T  42637603 tacatggatggagtgtgtcattggttgagtaaaa 42637570  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 42629991 - 42629932
Alignment:
Q  76 ttgtgggagatatattgtctaaaaagcaactcttggagaaagcttcatgtagatatgcct 135  Q
    |||||||||||||||||||| |||||||||||||||||||| ||| || || ||||||||    
T  42629991 ttgtgggagatatattgtcttaaaagcaactcttggagaaaacttgatataaatatgcct 42629932  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 9575808 - 9575748
Alignment:
Q  74 ctttgtgggagatatattgtctaaaaagcaactcttggagaaagcttcatgtagatatgcc 134  Q
    |||||||||||||||||||||||||||| |||| ||||||||| ||  || ||||||||||    
T  9575808 ctttgtgggagatatattgtctaaaaagtaactattggagaaaactcgatatagatatgcc 9575748  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 424
Target Start/End: Original strand, 40545117 - 40545160
Alignment:
Q  381 aacttttcacatatcaattttgggtgaagttgggatgaaggaat 424  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  40545117 aacttttcacatatcaattttgggtgaagttggtgtgaaggaat 40545160  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 413
Target Start/End: Original strand, 37512892 - 37512929
Alignment:
Q  376 acaacaacttttcacatatcaattttgggtgaagttgg 413  Q
    |||||||||||||||||||||||||||||||| |||||    
T  37512892 acaacaacttttcacatatcaattttgggtgaggttgg 37512929  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 16487118 - 16487064
Alignment:
Q  79 tgggagatatattgtctaaaaagcaactcttggagaaagcttcatgtagatatgc 133  Q
    |||||||||||| |||||| || ||||||||||||||| ||| |||| |||||||    
T  16487118 tgggagatatatagtctaagaaacaactcttggagaaaacttgatgtcgatatgc 16487064  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Complemental strand, 15807783 - 15807754
Alignment:
Q  385 tttcacatatcaattttgggtgaagttggg 414  Q
    ||||||||||||||||||||||||||||||    
T  15807783 tttcacatatcaattttgggtgaagttggg 15807754  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 42629702 - 42629669
Alignment:
Q  377 caacaacttttcacatatcaattttgggtgaagt 410  Q
    ||||||||||||| ||||||||||||||||||||    
T  42629702 caacaacttttcatatatcaattttgggtgaagt 42629669  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 41859772 - 41859696
Alignment:
Q  340 aatgggtcaattgcgttggtttcaaattttgcaaacacaacaacttttcacatatcaattttgggtgaagttgggat 416  Q
    ||||| |||||||| | |||||||| || |||||| |  || |||||||| |||||| |||| ||||||||||||||    
T  41859772 aatggatcaattgcatgggtttcaagttatgcaaagatgactacttttcatatatcagttttaggtgaagttgggat 41859696  T

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Target: scaffold0129 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 10484 - 10524
Alignment:
Q  382 acttttcacatatcaattttgggtgaagttgggatgaagga 422  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  10484 acttttcacatatcaattttgggtgaagttggtgtgaagga 10524  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 384 - 424
Target Start/End: Original strand, 5162455 - 5162495
Alignment:
Q  384 ttttcacatatcaattttgggtgaagttgggatgaaggaat 424  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  5162455 ttttcacatatcaattttgggtgaagttggtgtgaaggaat 5162495  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 3368212 - 3368153
Alignment:
Q  76 ttgtgggagatatattgtctaaaaagcaactcttggagaaagcttcatgtagatatgcct 135  Q
    |||||||||||||||| ||||||||| || |||||||||||  || || |||||||||||    
T  3368212 ttgtgggagatatattctctaaaaaggaattcttggagaaaagttgatatagatatgcct 3368153  T

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Target: scaffold0134 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 16294 - 16252
Alignment:
Q  382 acttttcacatatcaattttgggtgaagttgggatgaaggaat 424  Q
    ||||||||||||||||||||||||||| |||| | ||||||||    
T  16294 acttttcacatatcaattttgggtgaaattggtaagaaggaat 16252  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 413
Target Start/End: Original strand, 29131310 - 29131348
Alignment:
Q  375 cacaacaacttttcacatatcaattttgggtgaagttgg 413  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  29131310 cacaactacttttcacatatcaattttgggtgaatttgg 29131348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 32744977 - 32744887
Alignment:
Q  334 gtgttaaatgggtcaattgcgttggtttcaaattttgcaaacacaacaacttttcacatatcaattttgggtgaagttgggatgaaggaat 424  Q
    |||||||||||||| ||||| ||| | ||| ||| || ||| || || |||||||||||||||||| |||||||  |||| ||||| ||||    
T  32744977 gtgttaaatgggtccattgcattgatctcatattatgaaaagacgactacttttcacatatcaattatgggtgagattggtatgaaagaat 32744887  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 44937870 - 44937838
Alignment:
Q  376 acaacaacttttcacatatcaattttgggtgaa 408  Q
    ||||| |||||||||||||||||||||||||||    
T  44937870 acaactacttttcacatatcaattttgggtgaa 44937838  T

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