View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10218_high_5 (Length: 410)
Name: NF10218_high_5
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 38920242 - 38919861
Alignment:
| Q |
18 |
caggggtatgcttcgctctattgtaaagtatattcttgcatcattgttttggcgtcgttgtattgggttttcttctttgggtgtttgatgttccgtatat |
117 |
Q |
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| T |
38920242 |
caggggtatgcttcgctctattgtaaagtatattcttgcatcattgttttggcgtcgttgtattgggttttcttctttgggtgtttgatgttccgtatat |
38920143 |
T |
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| Q |
118 |
atgcggcatcctttgtatttttcccattttttccgcgagtttgattgtgcgtcttgtacgcccaaaacagagcacatggtaagaagtgggtggaagaaac |
217 |
Q |
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| T |
38920142 |
atgcggcatcctttgtatttttcccattttttccgcgagtttgattgtgcgtcttgtacgcccaaaacagagcacatggtaagaagtgggtggaagaaac |
38920043 |
T |
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| Q |
218 |
actttcttttaatgaacataaaacaatggttaatcagtataagaagtatctcattccttttacagcaaactagggtctgtatttgatccactctaaagaa |
317 |
Q |
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| T |
38920042 |
actttcttttaatgaacataaaacaatggttaatcagtataagaagtatctcattccttttacagcaaactagggtctgtatttgatccactctaaagaa |
38919943 |
T |
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| Q |
318 |
tttccatataatgcaacctaccaaaacaaattaggcttgactttttgcaaacttgcatatataacacaacatgtaatttctt |
399 |
Q |
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| T |
38919942 |
tttccatataatgcaacctaccaaaacaaattaggcttgactttttgcaaacttgcatatataacacaacatgtaatttctt |
38919861 |
T |
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