View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10218_high_6 (Length: 399)
Name: NF10218_high_6
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 11330811 - 11331179
Alignment:
| Q |
14 |
gatgaagacaattgatagtaagtaaatattgctagctcttctacttgttttcaggcatcatnnnnnnn-tattgttttgcttgctagtcacttatttgtg |
112 |
Q |
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| T |
11330811 |
gatggagacaattgatagtaagtaaatattgctagctcttctacttgttttcaggcatcataaaaaaaatattgttttgcttgctagtcgcttatttgtg |
11330910 |
T |
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| Q |
113 |
ttccaaccaactagttagatgataggcactttctcggtaatgaatgtacataatctcatttagattcttcaagctttatatttgaatggtttaaatcatg |
212 |
Q |
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| T |
11330911 |
ttccaaccaactagttagatgataggcactttctcgataatgaatgtacataatctcatttagattcttcaagctttatatttgattggtttaaatcatg |
11331010 |
T |
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| Q |
213 |
tagtcaatagaaatcgatacaaggaaatggttatcctaacatgcctgtttgcgtatttccatgattctttctttttcatgttatatgacttcacagtttc |
312 |
Q |
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| T |
11331011 |
tagtcaatagaaatcgatacaaggaaatggttatcctaacatgcctgtttgcgtatttccatgattctttctttttcatgttatatgacttcacagtttt |
11331110 |
T |
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| Q |
313 |
ctttaactacttcctgcgcatcatcaaaaatatttcagccatgcagaacaaatttctcaggttcgtctt |
381 |
Q |
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| T |
11331111 |
ctttaactacttccggcgcatcatcaaaaatatttcagccatgcagaacaaatttctcaggttcgtctt |
11331179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 382
Target Start/End: Complemental strand, 7177405 - 7177315
Alignment:
| Q |
293 |
ttatatgacttcacagtttcctttaactacttcctgcgcatcatcaaaaata-tttcagccatgcagaacaaatttctcaggttcgtcttg |
382 |
Q |
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| T |
7177405 |
ttatatgactccacagttttctttaactacttccgtcgcatcttcaaaaatattttcagccatgcagagcaaatttcccaggtttgtcttg |
7177315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 7178085 - 7178030
Alignment:
| Q |
19 |
agacaattgatagtaagtaaatattgctagctcttctacttgttttcaggcatcat |
74 |
Q |
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|||||||||||||||||||||||||| ||||| ||| |||||| || ||||||||| |
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| T |
7178085 |
agacaattgatagtaagtaaatattgttagcttttccacttgtatttaggcatcat |
7178030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 46356875 - 46356791
Alignment:
| Q |
293 |
ttatatgacttcacagtttcctttaactacttcctgcgcatcatcaaaaata-tttcagccatgcagaacaaatttctcaggttc |
376 |
Q |
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| T |
46356875 |
ttatatgacttcacagttttctttaactgctactgtcacatcttcaaaaatattttcagccatgccgtgcaaatttcccaggttc |
46356791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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