View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10218_high_7 (Length: 380)
Name: NF10218_high_7
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 39794181 - 39793833
Alignment:
| Q |
18 |
gtggcctaggaagcatcagattatttgggatatgattttttccaaaaggaaaaccttcatgacgacaagagagttccggctctagcctggtatgattgga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39794181 |
gtggcctaggaagcatcagattatttgggatatgattttttccaaaaggaaaaccttcatgacgacaagagagttccggctctagcctggtatgattgga |
39794082 |
T |
|
| Q |
118 |
gtttagccggatagacagagggatgtttcaggacgacatcactcagtcatttcgtaaaatcaactcgggttaattgtttgttacacgctaacttttaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39794081 |
gtttagccggatagacagagggatgtttcaggacgacatcactcagtcatttcgtaaaatcaactcgggttaattgtttgttacacgctaacttttaaaa |
39793982 |
T |
|
| Q |
218 |
atgtattgaatatatgattatgagagtataattaaacatacacatatattacagacaattagttatcttagatttttcttatatcactatcaccctatga |
317 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39793981 |
atgtattgcatatatgattatgagagtataattaaacatacacatatattacagacaattagttatcttagatttttctcatatcactatcaccctatga |
39793882 |
T |
|
| Q |
318 |
taggtggaactcagtgagaccttatggcttaccctaatccttttatttt |
366 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39793881 |
taggtggaactcagtgagaccttatcgcttaccctaatccttttatttt |
39793833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 7064079 - 7064023
Alignment:
| Q |
311 |
cctatgataggtggaactcagtgagaccttatggcttaccctaatccttttattttc |
367 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||| || |||||||||||||||||||| |
|
|
| T |
7064079 |
cctaggataggtggaactcactgagacattatgtctcaccctaatccttttattttc |
7064023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 7451273 - 7451211
Alignment:
| Q |
299 |
tatcactatcaccctatgataggtggaactcagtgagaccttatggcttaccctaatcctttt |
361 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | |||||||||||| || |||| ||||||||| |
|
|
| T |
7451273 |
tatcattatcaccctaggataggtggaacttactgagaccttatgtctcaccccaatcctttt |
7451211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 7451450 - 7451357
Alignment:
| Q |
119 |
tttagccggatagacagagggatgtttcaggacgacatcactc-agtcatttcgtaaaatcaactcgggttaattgtttgttacacgctaacttt |
212 |
Q |
| |
|
|||||||||||||| ||||| |||||| | ||| || |||| | || |||| | |||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
7451450 |
tttagccggatagaaagaggaatgttttaagactac-tcaccccagccattccataaaatcaactcatgttaattgattgttacacgctaacttt |
7451357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 20327029 - 20327074
Alignment:
| Q |
298 |
atatcactatcaccctatgataggtggaactcagtgagaccttatg |
343 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
20327029 |
atatcactttcaccctaggataggtggaagtcactgagaccttatg |
20327074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 41572615 - 41572684
Alignment:
| Q |
300 |
atcactatcaccctatgataggtggaactcagtgagaccttatggcttaccctaatccttttattttctt |
369 |
Q |
| |
|
||||||||||||| | ||||||||||||||| ||| |||||||| || | || ||||| ||||||||||| |
|
|
| T |
41572615 |
atcactatcacccaaggataggtggaactcactgataccttatgtctcatcccaatccatttattttctt |
41572684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 2935017 - 2934925
Alignment:
| Q |
55 |
ttttccaaaaggaaaaccttcatgacgacaagagagttccggctctagcctggtatg---attggagtttagccggatagacagagggatgtt |
144 |
Q |
| |
|
||||| ||||||||||| |||||||||| ||||| |||| ||||||||| |||| || |||||||| |||||||| |||||||||||| |
|
|
| T |
2935017 |
ttttctaaaaggaaaactttcatgacgataagaggagtccgactctagcctaatatgatcataggagtttatccggatagccagagggatgtt |
2934925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 38094046 - 38094092
Alignment:
| Q |
165 |
catttcgtaaaatcaactcgggttaattgtttgttacacgctaactt |
211 |
Q |
| |
|
||||| ||||||||||||| | |||||||||| |||||||||||||| |
|
|
| T |
38094046 |
cattttgtaaaatcaactcagattaattgttttttacacgctaactt |
38094092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University