View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10218_high_8 (Length: 365)
Name: NF10218_high_8
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 34843575 - 34843929
Alignment:
| Q |
1 |
gcttgtgttattttattttaaattatatgttatttacaccctatgtatgaaagcagtgaatattgnnnnnnnngggtacaa-gaagcggtgattcttagt |
99 |
Q |
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| T |
34843575 |
gcttgtgttattttattttaaattatatgttatttacaccctatgtatgaaagcagtgaatata-ttttttttgggtacaaagaagcggtgattcttagt |
34843673 |
T |
|
| Q |
100 |
gtttgatttgatatggataatgactagatgcatgtatagctcaatttggtttggtactatgatctatgtgcaaacataagcaaattagtattgtgcttaa |
199 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34843674 |
gtttgatttgatgtggataatgactagatgcatgtatagctcaatttggtttggtactatgatctatgtgcaaacataagcaaattagtattgtgctcaa |
34843773 |
T |
|
| Q |
200 |
gtttcaattaattcaattttatacgcttttatatataccttgcaagtggagtgtaaaaagctttttggtacctcaaagagaatatcttaatttccctcca |
299 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
34843774 |
gtttaaattaattcaattttatacgcttttatatataccttgcaagtggagtgtaaaaagc-ttttggtacctcaaagataatatcttaatttccctcca |
34843872 |
T |
|
| Q |
300 |
aatctttactatcaatattagcttagtcgccaattctcaacggctgcatgttcttct |
356 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34843873 |
aatctttactatcaatattagcttagtcaccaattctcaacggctgcatgttcttct |
34843929 |
T |
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