View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10218_low_1 (Length: 528)
Name: NF10218_low_1
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 20 - 520
Target Start/End: Complemental strand, 41784912 - 41784412
Alignment:
| Q |
20 |
ctttaatctcgcaagaaaaccttctttctcttccatcatagtttgttcagtagatctcatttcagctaactcctcttgcaactcacttttctggttgctt |
119 |
Q |
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| T |
41784912 |
ctttaacctcgcaagaaaaccttctttctcttccatcatagtttgttcagtagatctcatttcagctaactcctcttgcaactcacttttctggttgctt |
41784813 |
T |
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| Q |
120 |
tgtgtttccaatttgaattccatttcctttaaccgcgcaagaaaaccctctttctcttccatcatagtatgttcggttgatttcatttcggctaaattct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41784812 |
tgtgtttccaatttgaattccatttcctttaaccgcgcaagaaaaccctctttctcttccatcatagtatgttcggttgatttcatttcggctaaattct |
41784713 |
T |
|
| Q |
220 |
cctttaaattttccatctgaattaggaactgggatatttcttctgcttttctttccaactgagcttctaattctttgttatgattctctatagaatctaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41784712 |
cctttaaattttccatctgaattaggaactgggatatttcttctgcttttctttccaactgagcttctaattctttgttatgattctctatagaatctaa |
41784613 |
T |
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| Q |
320 |
cttttgttgcataacgttaagcttctccatcaagtcatctctttgcatagacgcttcattttgatcacattttattttttcttccatctcatctttttgg |
419 |
Q |
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| T |
41784612 |
cttttgttgcataacgttaagcttctccatcaagtcatctctttgcatagacgcttcattttgatcacattttattttttcttccatctcatctttttgg |
41784513 |
T |
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| Q |
420 |
gtcctcagagattcggtctcaagtacaagttcattgacttgtgccatcaatattacaatgttggattttgcttgttcctcgctgttgttgagtttcatct |
519 |
Q |
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| T |
41784512 |
gtcctcagagattcggtctcaagtacaagttcgttgacttgtgccatcaatattacaatgttggattttgcttgttcctcgctgttgttgagtttcatct |
41784413 |
T |
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| Q |
520 |
c |
520 |
Q |
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| T |
41784412 |
c |
41784412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 41784972 - 41784844
Alignment:
| Q |
86 |
taactcctcttgcaactcacttttctggttgctttgtgtttccaatttgaattccatttcctttaaccgcgcaagaaaaccctctttctcttccatcata |
185 |
Q |
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||||| ||||| ||||||| || |||| ||| |||| |||||||||| || |||||| | |||||||| |||||||||||| |||||||||||||||||| |
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| T |
41784972 |
taactgctcttccaactcatttctctgattgatttgagtttccaattcgagttccatgttctttaacctcgcaagaaaaccttctttctcttccatcata |
41784873 |
T |
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| Q |
186 |
gtatgttcggttgatttcatttcggctaa |
214 |
Q |
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| T |
41784872 |
gtttgttcagtagatctcatttcagctaa |
41784844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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