View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10218_low_13 (Length: 354)
Name: NF10218_low_13
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_low_13 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 35940163 - 35940493
Alignment:
| Q |
18 |
gatcaacatacagaaatgcctttgaggttaataatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35940163 |
gatcaacatacagaaatgcctttgaggttaataatggtgttcttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccag |
35940262 |
T |
|
| Q |
118 |
cataactctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagccagttgataaggaagacataggaatccttggcagttgattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35940263 |
cataactctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagccagttgataaggaagacataggaatccttggcagttgattt |
35940362 |
T |
|
| Q |
218 |
atctcctgacttgtcatagtcagaagttgtatttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactgcatatttcata |
317 |
Q |
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||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35940363 |
atctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactgcatatttcata |
35940462 |
T |
|
| Q |
318 |
atgatataagtttgtaagatattcatctctc |
348 |
Q |
| |
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|||||||||||||||||||||||||| |||| |
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| T |
35940463 |
atgatataagtttgtaagatattcatgtctc |
35940493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 24 - 348
Target Start/End: Original strand, 35910393 - 35910717
Alignment:
| Q |
24 |
catacagaaatgcctttgaggttaataatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcataac |
123 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35910393 |
catacagaaatgcctttgaggttaacaatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcataac |
35910492 |
T |
|
| Q |
124 |
tctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagccagttgataaggaagacataggaatccttggcagttgatttatctcc |
223 |
Q |
| |
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|||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||| |
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| T |
35910493 |
tctctccagttatgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctttggcagttgacttatctcc |
35910592 |
T |
|
| Q |
224 |
tgacttgtcatagtcagaagttgtatttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactgcatatttcataatgata |
323 |
Q |
| |
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||| |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35910593 |
tgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgcatatttcataatgata |
35910692 |
T |
|
| Q |
324 |
taagtttgtaagatattcatctctc |
348 |
Q |
| |
|
|||||| ||||||||||||| |||| |
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|
| T |
35910693 |
taagttggtaagatattcatgtctc |
35910717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 348
Target Start/End: Original strand, 35921197 - 35921524
Alignment:
| Q |
21 |
caacatacagaaatgcctttgaggttaataatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
35921197 |
caacatacagaaatgcctttgaggttaataatggtgttgttatagagtttattgttgtaaagaatagtggatgcaagttgaggaacataatgaccggcat |
35921296 |
T |
|
| Q |
121 |
aactctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagccagttgataaggaagacataggaatccttggcagttgatttatc |
220 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||| || ||||| |
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| T |
35921297 |
aactctctccagttatgtaaaaatctctggttttgtactgtggaaatctctccagccagttgattaggaagacataggcatctttagcagtggacttatc |
35921396 |
T |
|
| Q |
221 |
tcctgacttgtcatagtcagaagttgtatttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactgcatatttcataatg |
320 |
Q |
| |
|
|||||| ||||||||||| || | ||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| | |
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| T |
35921397 |
tcctgaattgtcatagtccgatgatgtgtttgagtaggaaaatcctacccctgctggagattccaagaagagtacatttgccactgcatatttcataagg |
35921496 |
T |
|
| Q |
321 |
atataagtttgtaagatattcatctctc |
348 |
Q |
| |
|
| ||||||| ||||||| |||| |||| |
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|
| T |
35921497 |
agttaagtttctaagataatcatgtctc |
35921524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 323
Target Start/End: Original strand, 35927791 - 35928092
Alignment:
| Q |
22 |
aacatacagaaatgcctttgaggttaataatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcata |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
35927791 |
aacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacataatgaccagcata |
35927890 |
T |
|
| Q |
122 |
actctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagccagttgataaggaagacataggaatccttggcagttgatttatct |
221 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||| |
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|
| T |
35927891 |
actctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggcagttgatttatct |
35927990 |
T |
|
| Q |
222 |
cctgacttgtcatagtcagaagttgtatttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactgcatatttcataatga |
321 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||| | |||||||||||| || ||||| ||||| || || ||||||||||||||||||| |
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| T |
35927991 |
cctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatga |
35928090 |
T |
|
| Q |
322 |
ta |
323 |
Q |
| |
|
|| |
|
|
| T |
35928091 |
ta |
35928092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 348
Target Start/End: Original strand, 35914825 - 35915152
Alignment:
| Q |
21 |
caacatacagaaatgcctttgaggttaataatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||| || |||||||| |||||||||| |
|
|
| T |
35914825 |
caacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtcgatgcaagctgcggaacatagtgaccagcat |
35914924 |
T |
|
| Q |
121 |
aactctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagccagttgataaggaagacataggaatccttggcagttgatttatc |
220 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| || || || || ||||| |
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|
| T |
35914925 |
aactctctccagttatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgatgaggaaaacataggcatctttagcggtggacttatc |
35915024 |
T |
|
| Q |
221 |
tcctgacttgtcatagtcagaagttgtatttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactgcatatttcataatg |
320 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||| || || |||||||||||||||| | |
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|
| T |
35915025 |
tcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgccggagattccaagaagagtacatttgcaactgcatatttcataagg |
35915124 |
T |
|
| Q |
321 |
atataagtttgtaagatattcatctctc |
348 |
Q |
| |
|
||||||||| |||||||| |||| |||| |
|
|
| T |
35915125 |
atataagttggtaagataatcatgtctc |
35915152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 35934600 - 35934893
Alignment:
| Q |
18 |
gatcaacatacagaaatgcctttgaggttaataatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccag |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35934600 |
gatcaacatacagatatgcctttgaggttaatgatggttttgttatagagtttatggtggtgaagaatagtggatgcaagttgaggaacataatgaccag |
35934699 |
T |
|
| Q |
118 |
cataactctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagccagttgataaggaagacataggaatccttggcagttgattt |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| || ||||| || || |
|
|
| T |
35934700 |
cataactctctccagttatgtaaaaatctctggttttgtactgtggaaatctctccagccagttgattaggaaaacataggcatctttagcagtggactt |
35934799 |
T |
|
| Q |
218 |
atctcctgacttgtcatagtcagaagttgtatttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactgcatat |
311 |
Q |
| |
|
|||||||| || | ||||||||||||||| ||||||||||||||||| | |||||||||||| || |||||||||| || || ||||||||| |
|
|
| T |
35934800 |
atctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgcatat |
35934893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 11084471 - 11084527
Alignment:
| Q |
92 |
tgcaagttgaggaacataatgaccagcataactctctccacttatgtaaaaatctct |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
11084471 |
tgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctct |
11084527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 6215695 - 6215780
Alignment:
| Q |
96 |
agttgaggaacataatgaccagcataactctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagccagtt |
181 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || ||| ||||| | ||||||| | || ||||||||||||||||| |||||||| |
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|
| T |
6215695 |
agttgagggacataatggccagcataactttcaccagttatgaagaaatctcgaatcttatactgtggaaatctctcaagccagtt |
6215780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 6208831 - 6208910
Alignment:
| Q |
99 |
tgaggaacataatgaccagcataactctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagcca |
178 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||| |||| | ||||||| || || ||||||||||||||||| ||||| |
|
|
| T |
6208831 |
tgaggaacataatggccagcataactttcaccagctatgaagaaatctcgagtcttatactgtggaaatctctcaagcca |
6208910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 316145 - 316182
Alignment:
| Q |
94 |
caagttgaggaacataatgaccagcataactctctcca |
131 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
316145 |
caagttgaggaacataatgtccagcataactttctcca |
316182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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