View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10218_low_14 (Length: 338)

Name: NF10218_low_14
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10218_low_14
NF10218_low_14
[»] chr7 (18 HSPs)
chr7 (10-194)||(35109647-35109831)
chr7 (10-194)||(38265229-38265413)
chr7 (11-195)||(21577091-21577275)
chr7 (10-183)||(41151139-41151313)
chr7 (17-194)||(34721790-34721967)
chr7 (21-197)||(16059356-16059532)
chr7 (11-194)||(38405147-38405330)
chr7 (21-195)||(18116947-18117121)
chr7 (10-191)||(45278411-45278592)
chr7 (10-156)||(12472115-12472261)
chr7 (23-196)||(11216723-11216896)
chr7 (17-132)||(37095209-37095324)
chr7 (11-137)||(245257-245383)
chr7 (21-191)||(48176359-48176529)
chr7 (17-149)||(23028684-23028816)
chr7 (17-118)||(28407540-28407637)
chr7 (102-195)||(40038620-40038713)
chr7 (17-60)||(39234853-39234896)
[»] scaffold0021 (1 HSPs)
scaffold0021 (17-198)||(107691-107871)
[»] chr3 (27 HSPs)
chr3 (17-198)||(7417750-7417931)
chr3 (17-194)||(8400811-8400988)
chr3 (17-195)||(22855842-22856020)
chr3 (17-194)||(35198721-35198898)
chr3 (11-167)||(50823681-50823837)
chr3 (11-167)||(50852023-50852179)
chr3 (21-196)||(34824510-34824685)
chr3 (21-183)||(55467966-55468129)
chr3 (10-179)||(43334046-43334215)
chr3 (17-196)||(52545275-52545454)
chr3 (54-194)||(48077977-48078117)
chr3 (18-121)||(22371729-22371832)
chr3 (10-135)||(29635883-29636009)
chr3 (17-103)||(37330606-37330692)
chr3 (18-103)||(30534902-30534987)
chr3 (11-127)||(19872476-19872592)
chr3 (10-165)||(50725989-50726144)
chr3 (10-165)||(50786704-50786859)
chr3 (10-176)||(42876189-42876355)
chr3 (17-103)||(37454743-37454829)
chr3 (10-90)||(25910658-25910738)
chr3 (16-111)||(30203652-30203744)
chr3 (10-194)||(39438821-39438995)
chr3 (17-118)||(25589253-25589347)
chr3 (10-61)||(773666-773717)
chr3 (87-178)||(5548970-5549061)
chr3 (23-68)||(31297529-31297574)
[»] chr4 (29 HSPs)
chr4 (11-195)||(51066448-51066632)
chr4 (10-195)||(46494390-46494575)
chr4 (18-174)||(36192517-36192673)
chr4 (17-195)||(7173584-7173762)
chr4 (17-195)||(39863777-39863955)
chr4 (48-195)||(8740403-8740550)
chr4 (11-196)||(50905702-50905887)
chr4 (200-328)||(36166326-36166454)
chr4 (11-170)||(51713958-51714117)
chr4 (11-196)||(32139117-32139303)
chr4 (17-170)||(30970383-30970536)
chr4 (21-183)||(2294719-2294875)
chr4 (11-121)||(29576444-29576554)
chr4 (10-122)||(55231715-55231827)
chr4 (10-135)||(2570216-2570341)
chr4 (11-156)||(47626986-47627133)
chr4 (11-112)||(676766-676867)
chr4 (17-94)||(22304090-22304167)
chr4 (11-124)||(41523423-41523536)
chr4 (10-117)||(4080544-4080651)
chr4 (10-139)||(50399634-50399763)
chr4 (20-112)||(51279035-51279127)
chr4 (47-148)||(22423378-22423479)
chr4 (12-83)||(23084459-23084530)
chr4 (29-86)||(37990606-37990663)
chr4 (155-195)||(51066204-51066244)
chr4 (16-115)||(40012548-40012646)
chr4 (21-64)||(51066240-51066283)
chr4 (163-195)||(21024163-21024195)
[»] chr8 (23 HSPs)
chr8 (10-197)||(11403954-11404141)
chr8 (10-194)||(19723267-19723451)
chr8 (17-194)||(32296638-32296815)
chr8 (11-198)||(4840092-4840279)
chr8 (11-194)||(22711465-22711648)
chr8 (11-193)||(28739554-28739736)
chr8 (10-169)||(29767169-29767326)
chr8 (12-196)||(11610234-11610418)
chr8 (10-174)||(41553261-41553425)
chr8 (21-132)||(17095568-17095679)
chr8 (74-195)||(27881044-27881165)
chr8 (74-195)||(28021225-28021346)
chr8 (17-194)||(30682795-30682971)
chr8 (51-194)||(24475029-24475172)
chr8 (11-117)||(36261679-36261785)
chr8 (38-121)||(21355004-21355087)
chr8 (10-104)||(11909415-11909509)
chr8 (16-117)||(43288105-43288206)
chr8 (11-78)||(27879553-27879620)
chr8 (11-78)||(28019734-28019801)
chr8 (123-193)||(6097521-6097591)
chr8 (11-138)||(44741914-44742038)
chr8 (70-141)||(2791312-2791383)
[»] chr5 (10 HSPs)
chr5 (10-194)||(17064279-17064463)
chr5 (16-194)||(20983001-20983179)
chr5 (17-166)||(37976530-37976683)
chr5 (17-184)||(41910792-41910957)
chr5 (98-194)||(35237103-35237199)
chr5 (23-117)||(31673863-31673956)
chr5 (11-61)||(35237052-35237102)
chr5 (17-133)||(5009416-5009531)
chr5 (22-140)||(39162859-39162977)
chr5 (60-131)||(18303352-18303423)
[»] chr2 (26 HSPs)
chr2 (11-197)||(10745225-10745411)
chr2 (11-195)||(40155995-40156179)
chr2 (17-198)||(44650345-44650526)
chr2 (10-194)||(5039376-5039560)
chr2 (11-203)||(36380125-36380317)
chr2 (11-194)||(17136343-17136526)
chr2 (28-194)||(6672803-6672969)
chr2 (11-195)||(2754044-2754228)
chr2 (10-178)||(21637869-21638037)
chr2 (11-194)||(25987654-25987838)
chr2 (11-157)||(45136963-45137109)
chr2 (11-194)||(26690110-26690293)
chr2 (11-195)||(2357069-2357252)
chr2 (17-168)||(36836328-36836479)
chr2 (20-194)||(30372682-30372856)
chr2 (11-196)||(7860139-7860324)
chr2 (12-183)||(3200849-3201019)
chr2 (18-173)||(13047156-13047306)
chr2 (11-127)||(558432-558548)
chr2 (17-158)||(33066582-33066723)
chr2 (21-182)||(4553561-4553723)
chr2 (32-195)||(21487105-21487266)
chr2 (117-194)||(2098939-2099016)
chr2 (17-67)||(2098825-2098875)
chr2 (80-135)||(20961496-20961551)
chr2 (72-112)||(30477240-30477280)
[»] chr6 (9 HSPs)
chr6 (11-195)||(35163743-35163927)
chr6 (11-182)||(19686820-19686991)
chr6 (11-195)||(2711733-2711911)
chr6 (10-127)||(20685348-20685465)
chr6 (12-196)||(14505519-14505700)
chr6 (16-127)||(17948703-17948814)
chr6 (28-123)||(15070152-15070247)
chr6 (96-191)||(14496311-14496406)
chr6 (47-132)||(24336633-24336718)
[»] chr1 (17 HSPs)
chr1 (21-194)||(30054445-30054618)
chr1 (10-195)||(30370052-30370237)
chr1 (10-194)||(12025137-12025321)
chr1 (11-194)||(20014414-20014597)
chr1 (10-195)||(45323961-45324146)
chr1 (21-191)||(21090074-21090244)
chr1 (10-182)||(33763246-33763418)
chr1 (12-170)||(4573359-4573517)
chr1 (11-125)||(22024128-22024242)
chr1 (11-121)||(14498072-14498182)
chr1 (19-163)||(30850841-30850985)
chr1 (10-182)||(35617948-35618115)
chr1 (10-124)||(33762532-33762646)
chr1 (30-162)||(44438562-44438694)
chr1 (28-106)||(35371755-35371833)
chr1 (104-194)||(15034411-15034501)
chr1 (10-78)||(17015192-17015260)
[»] scaffold0691 (1 HSPs)
scaffold0691 (43-194)||(6994-7141)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 35109831 - 35109647
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35109831 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 35109732  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  35109731 ctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 35109647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 38265229 - 38265413
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265229 ggttacataaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 38265328  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    |||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  38265329 ctccaaaggcactagcggggctcgaacccaggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 38265413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 21577091 - 21577275
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  21577091 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtatttacatttacctccc 21577190  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    |||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  21577191 tccaaaggcattagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtta 21577275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 183
Target Start/End: Complemental strand, 41151313 - 41151139
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaa-ggtaattacatttacctc 108  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41151313 ggttacaaaaaatttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacatttacctc 41151214  T
Q  109 cctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaag 183  Q
    ||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41151213 cctccaaagacactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaag 41151139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 34721967 - 34721790
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34721967 aaaattttagggtgaggggatggtgcccgagtccaaggcagggaagtccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 34721868  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  34721867 ggcactagcggggcttgaatccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 34721790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 16059356 - 16059532
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  16059356 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcagagagcacttacaaaggtaattacatttacctccctgcaaaggca 16059455  T
Q  121 ctagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaat 197  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||    
T  16059456 ctagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagtccaagcctttggagttaat 16059532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 38405147 - 38405330
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  38405147 gttacaaaatttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaagataattacatttacctccc 38405246  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||||||||||||||||  |||||||| ||  |||||||| ||||||||||||||||||||||||||||| ||| ||||| ||||    
T  38405247 tccaaaggcactagcgaggctcgaactcgaattctctcggattcaagacctgtctttttaccactagacgaagcctttgaagtt 38405330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 18116947 - 18117121
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  18116947 ttttagggtgaggggatggtgccccagtccaaggcagggaagatcttcgacctcaaagagcacctacaaaggtaattacatttacctccctctaaaggca 18117046  T
Q  121 ctagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    ||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||    
T  18117047 ctagcgtggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaacaagcctttggagtta 18117121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 45278592 - 45278411
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||| |||    
T  45278592 ggttacaaaaattttagggtgaggggatggtgctccagtccaaggcagggaagacattcgggtttaaagagcacttacaaagataattacatttacttcc 45278493  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttgga 191  Q
    || ||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||    
T  45278492 cttcaaaggcactagcggggctcgaacccgggttatctcggattcaagacctatctttttaccactagaccaagactttgga 45278411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 12472261 - 12472115
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||| ||| ||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  12472261 ggttacacaaagtttagggtgaggggatggtaccccagtccaagacagggaagaccttcgtgctcaaagagcacttacaaaggtaattatatttacctcc 12472162  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaa 156  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||    
T  12472161 ctccaaaggcactagtggggctcgaacccgggttctctcggattcaa 12472115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 11216896 - 11216723
Alignment:
Q  23 ttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcact 122  Q
    |||| ||||||| ||| ||||| ||||||| | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11216896 ttagggtgagggaatgatgccctagtccaaagtagagaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcact 11216797  T
Q  123 agcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaa 196  Q
    |  || ||||||||||||||||||||  ||||||||||||||  ||||||||||||||||  ||||||||||||    
T  11216796 aatggggctcgaacccgggttctctcagattcaagacctgtcactttaccactagaccaaacctttggagttaa 11216723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 37095209 - 37095324
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37095209 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 37095308  T
Q  117 ggcactagcggagctc 132  Q
    | ||||||||| ||||    
T  37095309 gacactagcggggctc 37095324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 245257 - 245383
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  245257 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgtttacaaagataattacatttacctccc 245356  T
Q  111 tccaaaggcactagcggagctcgaacc 137  Q
    ||||| ||||||||||| |||||||||    
T  245357 tccaagggcactagcggggctcgaacc 245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 48176529 - 48176359
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggc-agggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 119  Q
    |||||| |||||||||||||||||||||||||||  |||||| |||||| |||||||| | |||||||||| ||| |||||||||||||| |||||||||    
T  48176529 ttttagggtgaggggatggtgccccagtccaaggggagggaaaaccttccggctcaaaaaacacttacaaaagtatttacatttacctccttccaaaggc 48176430  T
Q  120 actagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttgga 191  Q
    |||||||| |||||||||||| |||||||| ||| |||| |||||||||||||| ||||||||| |||||||    
T  48176429 actagcggggctcgaacccggattctctcggatttaagatctgtctttttacca-tagaccaagcctttgga 48176359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 23028816 - 23028684
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    ||||||||||  |||| |||||||| | ||||| |||| ||||||| |||||||| ||||| | |||||| |||||||||||||||||| |||||| |||    
T  23028816 aaaattttaggatgagaggatggtgtctcagtctaaggtagggaaggccttcgggttcaaaaaacacttataaaggtaattacatttacatccctctaaa 23028717  T
Q  117 ggcactagcggagctcgaacccgggttctctcg 149  Q
    |||| ||| |||| |||||||||| ||||||||    
T  23028716 ggcattagaggagttcgaacccggattctctcg 23028684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 28407637 - 28407540
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||||||| ||||||||  |    |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||    
T  28407637 aaaattttagggtgaggggatggtgccccaatccaaggcttg----accttcgggctcaaagagcacttacaaaagtatttacatttacctccctctaaa 28407542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 40038713 - 40038620
Alignment:
Q  102 ttacctccctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    ||||||| || ||||||||||| |||  || |||  | |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||    
T  40038713 ttacctctcttcaaaggcactaacgggacttgaattcaggttctctcagattcaagacctgtctttttaccactagatcaagtctttggagtta 40038620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 39234896 - 39234853
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcaggga 60  Q
    |||||||| | |||||||||||||||||||||||| ||||||||    
T  39234896 aaaatttttgggtgaggggatggtgccccagtccatggcaggga 39234853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 107691 - 107871
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  107691 aaaattttag-gtgaggggatggtgccccagtccaaggcagggtagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 107789  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaata 198  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  107790 ggcactagcggggctcgaactcgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaata 107871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 7417931 - 7417750
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7417931 aaaattttagggtgaggggatggtgccccagtccaaggcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 7417832  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaata 198  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7417831 ggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagttaata 7417750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 8400988 - 8400811
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400988 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 8400889  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  8400888 ggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 8400811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 22856020 - 22855842
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22856020 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagacctttgggcttaaagagcacttacaaaggtaattacatttacctccctccaaa 22855921  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    | ||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||    
T  22855920 gacactagcggggctcgaacctgggttctctcgaatttaagacctgtctttttaccactagaccaaacctttggagtta 22855842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 35198898 - 35198721
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  35198898 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaa 35198799  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    |||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||    
T  35198798 ggcattagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtt 35198721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 50823837 - 50823681
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50823837 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 50823738  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtcttt 167  Q
    ||||||||||||| |||  ||||||||||| |||||||| ||||||||| |||||||    
T  50823737 tccaaaggcactaacgggactcgaacccggattctctcggattcaagacttgtcttt 50823681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 50852023 - 50852179
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50852023 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 50852122  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtcttt 167  Q
    ||||||||||||| |||  ||||||||||| |||||||| ||||||||| |||||||    
T  50852123 tccaaaggcactaacgggactcgaacccggattctctcggattcaagacttgtcttt 50852179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 34824685 - 34824510
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  34824685 ttttagggtgaggggatggtgccccagtccaaggccgggaagaccttcgggatcaaagagcacttacaaagataattacatttacctcccttcaaaggca 34824586  T
Q  121 ctagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaa 196  Q
    ||| |||  ||||||| | |||||||||| |||||||| || |||||||||||||||||||| |||||||||||||    
T  34824585 ctaacgggactcgaactcaggttctctcggattcaagatctatctttttaccactagaccaaatctttggagttaa 34824510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 55468129 - 55467966
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcggg-ctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 119  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  55468129 ttttagggtgaggggatggtgccccagtccaaggcagagaagaccttcggggctcaaagagcacttacaaaggtatttacatttacctccctccaaacgc 55468030  T
Q  120 actagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaag 183  Q
    | ||| || |||||||||||| |||||||||||||||||| |||| ||||||||||||||||||    
T  55468029 attagtggggctcgaacccggattctctcgaattcaagacatgtcattttaccactagaccaag 55467966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 43334046 - 43334215
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  43334046 ggttacaaaatttttagggtgaggggatggtaccccagtccaaggcagggaagaccttcgggctcaaatagcacttacaaaagtatttacatttacctcc 43334145  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagac 179  Q
    |||| ||| ||||||||| |||||||| |||||||||||| |||||| || |||| ||||||| ||||||    
T  43334146 ctcccaagacactagcggggctcgaactcgggttctctcggattcaaaacttgtcattttacctctagac 43334215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 52545454 - 52545275
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||||||||||  |||    
T  52545454 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagactacttacaaaagtatttacatttacctccctttaaa 52545355  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaa 196  Q
    ||||||||||| |||||||||||  || ||||| |||||||||||||| ||||| ||| |||||||  |||| |||||||    
T  52545354 ggcactagcggggctcgaacccgaattttctcggattcaagacctgtcattttatcaccagaccaaacctttcgagttaa 52545275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 54 - 194
Target Start/End: Original strand, 48077977 - 48078117
Alignment:
Q  54 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggagctcgaacccgggttctctcgaatt 153  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||||||||| |  ||||||||||| |||||||||||||    
T  48077977 gcagggaagaccttcaggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcgaatt 48078076  T
Q  154 caagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||||||||||| |||||||||||||||||| ||||| ||||    
T  48078077 caagacctgtcattttaccactagaccaagcctttgaagtt 48078117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 22371729 - 22371832
Alignment:
Q  18 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 117  Q
    ||||||||| |||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22371729 aaattttagggtgaggggatggtgccccagtctaaagcagggaagatcttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaag 22371828  T
Q  118 gcac 121  Q
    ||||    
T  22371829 gcac 22371832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 29636009 - 29635883
Alignment:
Q  10 ggttacaaaaattttagagtgaggggat-ggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctc 108  Q
    ||||||| ||||||||| ||||||| || ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  29636009 ggttacagaaattttagcgtgagggaattggtgccccactccaaggcagggaagacattcgggcttaaagagcacttacaaaggtaattacatttacctc 29635910  T
Q  109 cctccaaaggcactagcggagctcgaa 135  Q
    ||| ||||||||||||||  |||||||    
T  29635909 ccttcaaaggcactagcgaggctcgaa 29635883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 37330606 - 37330692
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37330606 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtaattacattt 37330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 30534902 - 30534987
Alignment:
Q  18 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 103  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30534902 aaattttagggtgaggggatggtaccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 30534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 19872476 - 19872592
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||| |||||||||||  ||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||||||||||||||  ||||||| ||    
T  19872476 gttataaaaattttaggatgaggggatggtgccccagtccaagacagggaagaccttcggattcaaagagtacttacaaaggtaattaattttaccttcc 19872575  T
Q  111 tccaaaggcactagcgg 127  Q
    ||||||||||| |||||    
T  19872576 tccaaaggcacaagcgg 19872592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 50725989 - 50726144
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||||| || ||| |||| |||||||||||||| ||||| | ||||||||| ||||  |||||| || ||||||||| ||||||| |||||||| |    
T  50725989 ggttacaaaatttgtagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttc 50726088  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtct 165  Q
    |||||||| ||||| ||| |||||||||||  |||||||| |||||||||||||||    
T  50726089 ctccaaagacactaacggggctcgaacccgaattctctcggattcaagacctgtct 50726144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 50786859 - 50786704
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||||| || ||| |||| |||||||||||||| ||||| | ||||||||| ||||  |||||| || ||||||||| ||||||| |||||||| |    
T  50786859 ggttacaaaatttgtagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttc 50786760  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtct 165  Q
    |||||||| ||||| ||| |||||||||||  |||||||| |||||||||||||||    
T  50786759 ctccaaagacactaacggggctcgaacccgaattctctcggattcaagacctgtct 50786704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 42876355 - 42876189
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||| ||| ||||| ||||| ||||||||||| ||||||||  ||||||||| |||  | |||||||||||||||||||||||||||||||||||||    
T  42876355 ggttacagaaaatttagggtgagaggatggtgccctagtccaagatagggaagacattcaagttcaaagagcacttacaaaggtaattacatttacctcc 42876256  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccacta 176  Q
     || |||| ||||||  | |||||||| || | || ||||||| ||||| || ||||||||||||||    
T  42876255 atctaaagacactagtcgggctcgaactcgagatccctcgaatacaagatctatctttttaccacta 42876189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 37454743 - 37454829
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 103  Q
    |||||||||| ||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37454743 aaaattttagggtgaggggatggtgccccaatctaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattatattt 37454829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 25910658 - 25910738
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaa 90  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||    
T  25910658 ggttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagatcttcggactcaaagagcacttacaaa 25910738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 30203652 - 30203744
Alignment:
Q  16 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 111  Q
    |||| |||||||||||||||||||||||||||| |||| || |||| ||||||| ||||||||| || ||||||||||  ||||||||||||||||    
T  30203652 aaaatttttagagtgaggggatggtgccccagttcaagaca-ggaaaaccttcgagctcaaagaacatttacaaaggt--ttacatttacctccct 30203744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 39438821 - 39438995
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||| ||| ||||| || ||  | ||||| |||||||||||||         ||||| |    
T  39438821 ggttacaaaaattttagggtgaggg-atggtgccccagttcaaggtaggaaagacttttggatttaaagaacacttacaaaggt---------taccttc 39438910  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||| |||||||||||||||  | ||||| || |||||||| |||||||| ||||||||||| ||||| | |||| ||||| ||||    
T  39438911 ctctaaaggcactagcggaatttgaacctggattctctcggattcaagatctgtctttttaacactatagcaagcctttgaagtt 39438995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 25589347 - 25589253
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||| |||||||| |||||||||||||       |||| |||||||||||||||| |||||| |||||||||||||| ||||||    
T  25589347 aaaattttagggtgaggggagggtgcccccgtccaaggcaggg-------tcggactcaaagagcacttactaaggtatttacatttacctccttccaaa 25589255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 773717 - 773666
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaa 61  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  773717 ggttacaaaaattctagggtgaggggatggtgccccagtccaaggaagggaa 773666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 5549061 - 5548970
Alignment:
Q  87 caaaggtaattacatttacctccctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactaga 178  Q
    |||||||| ||||||||| ||||||||||| ||| |||   |||||||| ||  | ||||||| ||| ||||||| ||||||||||||||||    
T  5549061 caaaggtatttacatttatctccctccaaaagcattagtaaagctcgaatccaagatctctcggattgaagacctatctttttaccactaga 5548970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 31297529 - 31297574
Alignment:
Q  23 ttagagtgaggggatggtgccccagtccaaggcagggaagaccttc 68  Q
    |||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  31297529 ttagggtgagggcatggttccccagtccaaggcaaggaagaccttc 31297574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 51066632 - 51066448
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51066632 gttacaaattttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttacctccc 51066533  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51066532 tccaaaggcactagcggagctcgaacccgagttctctcggattcaagacctgtctttttaccactagaccaagtctttggagtta 51066448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 46494390 - 46494575
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46494390 ggttacaaaatttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 46494489  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    ||||||||||||||| || ||||||||||||||||||||| |||||||||||||| |||||||||||||||||  |||||||||||    
T  46494490 ctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaaacctttggagtta 46494575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 36192673 - 36192517
Alignment:
Q  18 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 117  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  36192673 aaattttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaag 36192574  T
Q  118 gcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccac 174  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  36192573 gcactagtggggctcgaacccgggttctctcgaattcaagacctgtctttttaccac 36192517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 7173584 - 7173762
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||    
T  7173584 aaaattttagggtgaggggatggtgccccagtccaacgcagggaagaccttcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaa 7173683  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    |||||||||||  || |||||  |||||||||| |||||||||||||| |||||||||||||||||| |||||||||||    
T  7173684 ggcactagcgggtcttgaacctaggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtta 7173762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 39863777 - 39863955
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||| ||| | |||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  39863777 aaaattttagggtgaggggatagtgtctcagtccaaggtagagaagaccttcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaa 39863876  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  39863877 ggcactagcggggtccgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtta 39863955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 48 - 195
Target Start/End: Complemental strand, 8740550 - 8740403
Alignment:
Q  48 tccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggagctcgaacccgggttctct 147  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  8740550 tccaaggcatggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaacccgggatctct 8740451  T
Q  148 cgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    || ||||||||||||||||||||||||||||||||| |||||||||||    
T  8740450 cggattcaagacctgtctttttaccactagaccaagcctttggagtta 8740403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 50905887 - 50905702
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||  ||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||| |    
T  50905887 gttacaaaaattttagggtgaaaggatggtgccccagttcaaggcatggaagaccttcggactcaaagagcacctacaaagataattacatttacctctc 50905788  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaa 196  Q
    ||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||    
T  50905787 tccaaaggcactagcggggctcgaacccagattctctcggattcaagacctgtctttttaccactagactaaacctttggagttaa 50905702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 36166326 - 36166454
Alignment:
Q  200 tttgatttaacaatgtttatgtacgttgatgtttgattattctgttaaattcaatgaaagttctcccccaatgacggttcattagacaatcatacttgct 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36166326 tttgatttaacaatgtttatgtacgttgatgtttgattattctgttaaattcaatgaaaggtctcccccaatgacggttcattagacaatcatacttgct 36166425  T
Q  300 ctccgcggccatcttttgataatcctatg 328  Q
    |||| ||||||||||||||||||||||||    
T  36166426 ctcctcggccatcttttgataatcctatg 36166454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 51713958 - 51714117
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  51713958 gttacaaaaattttagggtgaggggatggtgccccagttcaaagcagggaagaccttcgggctcaaagagcacttacaaaggtatttatatttacctccc 51714057  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtcttttta 170  Q
    | |||||||||||| || ||||||||||||||||||||| |||||||||||||| |||||    
T  51714058 ttcaaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtcatttta 51714117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 32139303 - 32139117
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||| ||||| ||||| |||| ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  32139303 gttataaaaaatttagggtgaagggatggtgccccagtccaaggcagagaagaccttcaggctcaaagaacacttacaaaggtaattacatttacctccc 32139204  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtc-tttggagttaa 196  Q
    ||||||| ||||||||| | |||||||| |||||||||| ||||| |||||||| |||||||||||||||||| | |||||||||||    
T  32139203 tccaaagacactagcggggttcgaacccaggttctctcggattcatgacctgtccttttaccactagaccaagccttttggagttaa 32139117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 30970383 - 30970536
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  30970383 aaaattttagggtgaggggatggtgccccagtctaaggtagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctcccttcaaa 30970482  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtcttttta 170  Q
    |||||||| |  |||||||||||| |||||||| |||||||||||||| |||||    
T  30970483 ggcactagtgaggctcgaacccggattctctcggattcaagacctgtcatttta 30970536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 2294719 - 2294875
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||| |||||||||||||||||||||| ||||||| |||||| ||||||||||| || |||||      |||||||||||||||| ||||||||||||    
T  2294719 ttttagggtgaggggatggtgccccagtctaaggcagtgaagactttcgggctcaacgaacactt------gtaattacatttaccttcctccaaaggca 2294812  T
Q  121 ctagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaag 183  Q
    |||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2294813 ctagcgaaactcgaacccgagttctctcgaattcaagacctgtctttttaccactagaccaag 2294875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 29576554 - 29576444
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  29576554 gttacaaaaattttagggtgagggggtggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaagttatttacatttacctccc 29576455  T
Q  111 tccaaaggcac 121  Q
    |||||||||||    
T  29576454 tccaaaggcac 29576444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 55231827 - 55231715
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||    
T  55231827 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagacattcaggctcaaagagcacttacaaaagtatttacatttacctcc 55231728  T
Q  110 ctccaaaggcact 122  Q
    || ||||||||||    
T  55231727 cttcaaaggcact 55231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 2570341 - 2570216
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| || ||| || | || ||| ||||||||||    
T  2570341 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagatcttcggactcaaagaacatttataatgatatttatatttacctcc 2570242  T
Q  110 ctccaaaggcactagcggagctcgaa 135  Q
    |||||||||||| |||||||||||||    
T  2570241 ctccaaaggcaccagcggagctcgaa 2570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 47626986 - 47627133
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||| |||||||  |||||||||||||||||||||||||| | |||||||| | ||| | ||||| |||||||||||||||    
T  47626986 gttacaaaaattttagggtgaggagatggtgttccagtccaaggcagggaagaccttcgagttcaaagagtatttatagaggtatttacatttacctccc 47627085  T
Q  111 tccaaaggcactagcggag--ctcgaacccgggttctctcgaattcaa 156  Q
    | |||||||||||| || |  |||||| ||||||||||||| ||||||    
T  47627086 ttcaaaggcactagtggggctctcgaatccgggttctctcggattcaa 47627133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 676867 - 676766
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||  || |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  676867 gttacaaaaattttaaggtaaggggatggtgttacagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacacttacctccc 676768  T
Q  111 tc 112  Q
    ||    
T  676767 tc 676766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 22304090 - 22304167
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggta 94  Q
    |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22304090 aaaattttagggtgagaggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggta 22304167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 41523536 - 41523423
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    ||||||||| ||||||  ||| ||||||||| |||| ||||||  |||||||||||||| |||||||||||||||| ||||||| |||||||||||||||    
T  41523536 gttacaaaatttttaggatgaagggatggtgtcccaatccaagatagggaagaccttcgagctcaaagagcacttataaaggtatttacatttacctccc 41523437  T
Q  111 tccaaaggcactag 124  Q
    ||||||| ||||||    
T  41523436 tccaaagacactag 41523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 4080544 - 4080651
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||  | ||||||||||||| ||| |||||| ||| |||||| ||| | ||||||||||| ||||||| ||||||||||||||||||    
T  4080544 ggttacaaaaattttaaggcgaggggatggtgctccaatccaagacagagaagacattcagactcaaagagcatttacaaatgtaattacatttacctcc 4080643  T
Q  110 ctccaaag 117  Q
    ||||||||    
T  4080644 ctccaaag 4080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 50399634 - 50399763
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||| ||| ||||| ||||| ||||| |||||   ||||||| || |||||| ||  |||||||||| |||||||||||||| |||||||||||| |    
T  50399634 ggttacataaaatttagggtgagcggatgatgcccttatccaaggtagagaagacatttaggctcaaagaacacttacaaaggtatttacatttaccttc 50399733  T
Q  110 ctccaaaggcactagcggagctcgaacccg 139  Q
    ||||||  |||||||||| |||||||||||    
T  50399734 ctccaagagcactagcggggctcgaacccg 50399763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 51279035 - 51279127
Alignment:
Q  20 attttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctc 112  Q
    ||||||| ||||||||||||||||  | |||||||  ||||||||||| |||||||||||||||||||||| ||| ||||||| |||||||||    
T  51279035 attttagggtgaggggatggtgccttaatccaaggttgggaagacctttgggctcaaagagcacttacaaaagtatttacattgacctccctc 51279127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 22423479 - 22423378
Alignment:
Q  47 gtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggagctcgaacccgggttctc 146  Q
    |||||| ||||||||||||||||  | |||||| |||||||||| ||| ||||||||||||||||||||||| |||| | | ||||||| ||| | ||||    
T  22423479 gtccaaagcagggaagaccttcgaacacaaagaacacttacaaaagtatttacatttacctccctccaaaggtactaaccgggctcgaatccgagatctc 22423380  T
Q  147 tc 148  Q
    ||    
T  22423379 tc 22423378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 23084459 - 23084530
Alignment:
Q  12 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcac 83  Q
    |||||||| |||||| |||||| |||||| ||||||| ||||| ||||||||||||||| ||||||||||||    
T  23084459 ttacaaaatttttagggtgaggagatggtaccccagttcaaggtagggaagaccttcggactcaaagagcac 23084530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 37990606 - 37990663
Alignment:
Q  29 tgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcactta 86  Q
    |||||| ||||||||||||||||||| |||||||| |||| ||||||||||| |||||    
T  37990606 tgagggaatggtgccccagtccaaggtagggaagatcttcaggctcaaagagtactta 37990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 51066244 - 51066204
Alignment:
Q  155 aagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  51066244 aagacttgtctttttaccactagaccaagtctttggagtta 51066204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 40012646 - 40012548
Alignment:
Q  16 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 115  Q
    ||||| ||||| ||||| ||| |||| || ||||||| | ||||||||||||  | ||||| ||||||| ||||||| | ||||||||||||||||||||    
T  40012646 aaaaaatttagtgtgagaggacggtgtcctagtccaacgtagggaagaccttatgactcaa-gagcactcacaaagggatttacatttacctccctccaa 40012548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 51066283 - 51066240
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagac 64  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  51066283 ttttagggtgaggggatggtgccccagttcaaggcagggaagac 51066240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 21024163 - 21024195
Alignment:
Q  163 tctttttaccactagaccaagtctttggagtta 195  Q
    |||||||||||||||| ||||||||||||||||    
T  21024163 tctttttaccactagatcaagtctttggagtta 21024195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 11404141 - 11403954
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11404141 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 11404042  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaat 197  Q
    |||||||| ||||||||  |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11404041 ctccaaagacactagcgaggctcgaacccaggttctctcgaattcaagacctgtcattttaccactagaccaagtctttggagttaat 11403954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 19723451 - 19723267
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  19723451 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagatctttgggctcaaagagcacttacaaaggtaattacatttacctcc 19723352  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||    
T  19723351 ctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 19723267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 32296638 - 32296815
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32296638 aaaattttagggtgaggggatggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaa 32296737  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||    
T  32296738 ggcactagcagggcttgaacccgggttctctcaaattcaagacctgtctttttaccactagaccaaacctttggagtt 32296815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 4840279 - 4840092
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||| |||||||||||||    
T  4840279 gttacagaaattttagggtgaggggatggtgccctagtccaaggcagggaagacctttggactcaaagagcacttacaatggtaatgacatttacctccc 4840180  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaata 198  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  4840179 tccaaaggcactagcggggctcgaacccgggttctctcggattcaaaacctatctttttaccactagaccaagcctttggagttaata 4840092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 22711648 - 22711465
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22711648 gttacaaaaattttaggatgaggggatggtgccccagtccaaggcaaggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 22711549  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    |||||||||| |||  |  ||| |||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||    
T  22711548 tccaaaggcattagttggactcaaacccgagttctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 22711465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 28739554 - 28739736
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    ||||||||| |||||| |||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| | ||    
T  28739554 gttacaaaatttttagggtgaggggatggtgctgcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttactttcc 28739653  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagt 193  Q
    |||||||||||||| || ||| |||||| |||||||| |||||||||||||||| |||||||||||||||||| |||||||||    
T  28739654 tccaaaggcactagtggggcttgaacccaggttctctagaattcaagacctgtcattttaccactagaccaagcctttggagt 28739736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 29767326 - 29767169
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  29767326 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagaacacttacaaaggtaatt--atttacctcc 29767229  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtcttttt 169  Q
    || ||||||||||||||| |||||| |||||||||||||  |||||||||||||||||||    
T  29767228 cttcaaaggcactagcggggctcgaccccgggttctctcagattcaagacctgtcttttt 29767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 11610418 - 11610234
Alignment:
Q  12 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||  | | |||||||||||||| ||| ||||||||||||| || ||| ||||||||  ||    
T  11610418 ttacaaaaattttagggtgaggggatggtgccccagtccaagataagtaagaccttcgggcttaaacagcacttacaaagatatttatatttacctttct 11610319  T
Q  112 ccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaa 196  Q
    |||||||||||||||  ||||||| ||| | ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||    
T  11610318 ccaaaggcactagcgaggctcgaatccgagatctctcggattcaagacctgtctttttaccactagaccaaacctttggagttaa 11610234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 10 - 174
Target Start/End: Complemental strand, 41553425 - 41553261
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| | |    
T  41553425 ggttacaaaaattttagggtgaggggatggtgctccagtctaaggcagggaagaccttcgagctcaaagaacacttacaaaggtatttacatttacgttc 41553326  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccac 174  Q
    |||||||| || ||| ||  ||||||| |||||||||||||||||||||||| || |||||||||    
T  41553325 ctccaaagacattagtgggactcgaactcgggttctctcgaattcaagacctatcattttaccac 41553261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 17095679 - 17095568
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17095679 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 17095580  T
Q  121 ctagcggagctc 132  Q
    ||||||| ||||    
T  17095579 ctagcggggctc 17095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 27881044 - 27881165
Alignment:
Q  74 caaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttacca 173  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||  |||||||||||||| ||||||||    
T  27881044 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 27881143  T
Q  174 ctagaccaagtctttggagtta 195  Q
    |||||||||| |||||||||||    
T  27881144 ctagaccaagcctttggagtta 27881165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 28021225 - 28021346
Alignment:
Q  74 caaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttacca 173  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||  |||||||||||||| ||||||||    
T  28021225 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 28021324  T
Q  174 ctagaccaagtctttggagtta 195  Q
    |||||||||| |||||||||||    
T  28021325 ctagaccaagcctttggagtta 28021346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 30682971 - 30682795
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||  ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||| ||| |||||||    
T  30682971 aaaattttaaggtgaggggatggtgccc-agtccaaggcagggaagatcttcgggctcaaagaacacttacaaaagtatttacatttatctctctccaaa 30682873  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||||| || || |||||||| |||| ||||| |||||||||| ||| | || ||||||||||||||| ||||||||||    
T  30682872 ggcaccagtggggctcgaacacgggctctcttgaattcaagaactgccattgtaccactagaccaagcctttggagtt 30682795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 24475029 - 24475172
Alignment:
Q  51 aaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggagctcgaacccgggttctctcga 150  Q
    |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||  |||| |||     
T  24475029 aaggcaggaaagaccttcgggctcaaagaacacttacaaaggtatttacatttacctccctccaaaggcactagcggagctcgaattcgaattctatcgg 24475128  T
Q  151 attcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    |||||||||||||| | |||| ||||||||||| ||||||||||    
T  24475129 attcaagacctgtcatcttactactagaccaagcctttggagtt 24475172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 36261785 - 36261679
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36261785 gttacaaaaattttaaggtgaggggatggtgccccagttcaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccc 36261686  T
Q  111 tccaaag 117  Q
    |||||||    
T  36261685 tccaaag 36261679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 21355004 - 21355087
Alignment:
Q  38 ggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 121  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21355004 ggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 21355087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 11909415 - 11909509
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattta 104  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  11909415 ggttacaaaatttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttagaaaggtatttacattta 11909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 43288206 - 43288105
Alignment:
Q  16 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 115  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||||||||||||    
T  43288206 aaaaaatttagggtgaggggatggtgctccagtccaaggcagggaagaccttcggactcaaaaatcaattacaaaggtaattacatttacctccctccaa 43288107  T
Q  116 ag 117  Q
    ||    
T  43288106 ag 43288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 27879553 - 27879620
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 78  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||    
T  27879553 gttacaaaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 27879620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 28019734 - 28019801
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 78  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||    
T  28019734 gttacaaaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 28019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 6097591 - 6097521
Alignment:
Q  123 agcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagt 193  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||  ||||||||    
T  6097591 agcggggctcgaactcggattctctcgaattcaagacctgtctttttaccataagaccaagcttttggagt 6097521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 44741914 - 44742038
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    ||||||||||||| || ||||||||||||  ||||||||||||||||| |||||| | || ||    ||||||||||||||| | | | ||| || || |    
T  44741914 gttacaaaaattt-agggtgaggggatggcaccccagtccaaggcaggtaagaccataggact--tggagcacttacaaagggattaatattaacttctc 44742010  T
Q  111 tccaaaggcactagcggagctcgaaccc 138  Q
    ||||||||||||||||  ||||||||||    
T  44742011 tccaaaggcactagcgaggctcgaaccc 44742038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 2791312 - 2791383
Alignment:
Q  70 ggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggagctcgaacccggg 141  Q
    |||||||||||   ||| ||||| | |||||||||||||||||||| || ||||||| ||||| ||||||||    
T  2791312 ggctcaaagagtgtttagaaagggatttacatttacctccctccaaggggactagcgaagctcaaacccggg 2791383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 17064463 - 17064279
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  17064463 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggcttaaagagcacttacaaaggtatttacatttacctcc 17064364  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    |||||||||||||||||  ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  17064363 ctccaaaggcactagcgaggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 17064279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 20983001 - 20983179
Alignment:
Q  16 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 115  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |||| |    
T  20983001 aaaatttttagggtgaggggatggtgccccagtccaaggcagggaagactttcgggctcaaagagcacttacaaatgtaattgcatttacctctctccga 20983100  T
Q  116 aggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    |||||||||||| |||||||||||| |||||| | |||||||||||||||||||| |||||||||||| ||||||||||    
T  20983101 aggcactagcggggctcgaacccggattctcttggattcaagacctgtctttttatcactagaccaagcctttggagtt 20983179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 37976683 - 37976530
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattac----atttacctccctc 112  Q
    |||||||||| ||||||||||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||| ||||    ||||||||||||     
T  37976683 aaaattttagggtgaggggatggtgccccagttcaaggcaggaaaaaccttcgggctcaaatagcacttacaaaggtatttacattaatttacctccctt 37976584  T
Q  113 caaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctt 166  Q
    |||| |||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  37976583 caaatgcactagcggggctcgaacccaggttctctcggattcaagacctgtctt 37976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 41910957 - 41910792
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||  ||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||    
T  41910957 aaaattttaaggtgaggggatggtgccccagttcaaggcagagaagacattcgggctcaaagaacacttacaaagttaattacatttacct-cctccaaa 41910859  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagt 184  Q
    |  |||| |  | ||| |||||   |||||||  |||||||||||||||||||||||||||| |||||    
T  41910858 gatactaac-aaactcaaacccaaattctctcagattcaagacctgtctttttaccactagagcaagt 41910792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 35237103 - 35237199
Alignment:
Q  98 acatttacctccctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    |||||||||||||| ||||| ||||||||| ||||||| || | |||||||||||||||||| | || |||||||||||||||||| |||| |||||    
T  35237103 acatttacctcccttcaaagacactagcggggctcgaatccagattctctcgaattcaagacgtatcattttaccactagaccaagcctttagagtt 35237199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 31673956 - 31673863
Alignment:
Q  23 ttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 117  Q
    |||| |||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||| |||||| | |||||||| |||| ||||||||    
T  31673956 ttagggtgaggggttggtgccccagtccaaggcagggaggaccttagggctcaaagggcactt-caaagggatttacattttcctctctccaaag 31673863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 35237052 - 35237102
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaa 61  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  35237052 gttacagaaattttagagtgaggggatggtgcctcagtccaaggcagggaa 35237102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 5009416 - 5009531
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||| ||||||| ||| ||||| ||||||| |||||||||||||  ||||||| || |||||||  || ||||||||| ||| |||||||    
T  5009416 aaaattttagggtg-ggggatgatgcaccagttcaaggcatggaagaccttcggattcaaagaacatttacaaaaatatttacatttatctctctccaaa 5009514  T
Q  117 ggcactagcggagctcg 133  Q
    | ||||| ||| |||||    
T  5009515 gacactaacggggctcg 5009531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 39162859 - 39162977
Alignment:
Q  22 tttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttaca-aaggtaattacatttacctccctcc---aaag 117  Q
    ||||| |||| |||| |||||||||||||||||||  |||||||    ||||||||||||| ||||| |||||| |||||||||||| |||||   || |    
T  39162859 tttagggtgatgggacggtgccccagtccaaggcacagaagacc----ggctcaaagagcatttacacaaggtatttacatttaccttcctcctccaagg 39162954  T
Q  118 gcactagcggagctcgaacccgg 140  Q
    |||||||  | ||||||||||||    
T  39162955 gcactagttgggctcgaacccgg 39162977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 18303352 - 18303423
Alignment:
Q  60 aagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggagct 131  Q
    |||||||||||| | |||||||||||||||| ||| |||| ||||| | ||||||||| || || |||||||    
T  18303352 aagaccttcgggtttaaagagcacttacaaaagtatttacgtttactttcctccaaagtcattaacggagct 18303423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 7e-80; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 10745225 - 10745411
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  10745225 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaataccttcgggttcaaagagcacttacaaagataattacatttacctccc 10745324  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaat 197  Q
    || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  10745325 tctaaaggcactagcggggctcggacccgggttctctcgaattcaagacctgtctttttaccactaaaccaagcctttggagttaat 10745411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 40156179 - 40155995
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40156179 gttacaaaaattttatggtgaggggatggtgccccagttcaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 40156080  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    ||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  40156079 tccaaaggcactagcggggctcgaacccggattctctcggattcaagacctgtctttttaccactagaccaaacctttggagtta 40155995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 44650526 - 44650345
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44650526 aaaattttagggtgaggggatggtgccccggtccaaggcagggaagatcttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaa 44650427  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaata 198  Q
    ||||||| |||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44650426 ggcactaacggagctcgaaatcgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagttaata 44650345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 5039560 - 5039376
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  5039560 ggttacaaaaattttagagtgaggggatggtgccctagtccaaggtagggaagatcttcgggctcaaagagcacttacaaaggtaattacgtttacctcc 5039461  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||| ||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| ||||||||||    
T  5039460 ctctaaaagcactagcggagctcgaacccgagttctctcggattcaagacctgtctttttaccactataccaagcctttggagtt 5039376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 36380125 - 36380317
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36380125 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaagggaattacatttacctccc 36380224  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaatagtttg 203  Q
    ||||||||||||||||| | || |||||| ||| ||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||    
T  36380225 tccaaaggcactagcggggttcaaacccgagttttctcgaattcaagacctgtctgtttaccactagaccaagcctttgaagttaataatttg 36380317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 17136526 - 17136343
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17136526 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcggggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 17136427  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||||||||||||| ||| ||||||||||||||||||||  |||||| ||||||| ||||| |||||||||||| ||||||||||    
T  17136426 tccaaaggcactaacggggctcgaacccgggttctctcagattcaaaacctgtcattttatcactagaccaagcctttggagtt 17136343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 6672803 - 6672969
Alignment:
Q  28 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcgg 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  6672803 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcgg 6672902  T
Q  128 agctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
     ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||    
T  6672903 ggcttgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 6672969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 2754044 - 2754228
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  2754044 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccc 2754143  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    |||||||||| ||| ||  |||||| ||||||||||||| |||||||||||||| ||||||||||| |||||| ||||| |||||    
T  2754144 tccaaaggcattagtgggactcgaatccgggttctctcggattcaagacctgtcattttaccactaaaccaagcctttgaagtta 2754228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 21638037 - 21637869
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  21638037 ggttacaaaaattttagggtgaggggatggtgccctagtccaaggcagagaagacctttgggctcaaagagcacttacaaaggtatttacatttacctcc 21637938  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactaga 178  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||| || |||||||||||||    
T  21637937 ctccaaaggcactagcggggctcaaacccgggttctctcgaattcaagacctatcattttaccactaga 21637869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 25987654 - 25987838
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaa-gaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25987654 gttacaaaaattttagggtgaggggatggtgccccagaccaaggcagggaaagaccttcggactcaaagagcacttacaaaggtaattacatttacctcc 25987753  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |  | |||| ||||||||||    
T  25987754 ctccaaaggcactagcggggctcgaacccgagttctctcggattcaagacctgtctttttaccattgtatcaagcctttggagtt 25987838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 45136963 - 45137109
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45136963 gttacaaaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 45137062  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaag 157  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  45137063 tccaaaggcactagcggggctcgaacccgggttctctcggattcaag 45137109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 26690293 - 26690110
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||  | |||||| ||||||||||||||||||||||||||||||    
T  26690293 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcgaacacaaagatcacttacaaaggtaattacatttacctccc 26690194  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    |||||| ||||||||||  ||||||||| | |||||||||||| || |||||||||||||||||||||||||| ||||||||||    
T  26690193 tccaaaagcactagcgggactcgaacccagattctctcgaatttaaaacctgtctttttaccactagaccaagcctttggagtt 26690110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 2357069 - 2357252
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||  |||||| |||| |||||| |||| |||||||||||||||    
T  2357069 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcatggaagaccttcgaactcaaa-agcatttacaatggtatttacatttacctccc 2357167  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    |||||||| ||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||    
T  2357168 tccaaaggtactagtggaactcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtta 2357252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 36836328 - 36836479
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36836328 aaaattttaaggtgaggggatggtgccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36836427  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttt 168  Q
    ||||| |||||  ||||||| |||||||||||| ||||||||||||||||||    
T  36836428 ggcaccagcgggactcgaactcgggttctctcggattcaagacctgtctttt 36836479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 30372682 - 30372856
Alignment:
Q  20 attttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 119  Q
    ||||||| ||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||| |||||||||    
T  30372682 attttagggtgagggtatggtaccccagttcaaggcatggaagaccttcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggc 30372781  T
Q  120 actagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  30372782 actagcggagctcgaacccaggatctctcgaattcaagacctatctttttaccactagaccaaacctttggagtt 30372856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 7860139 - 7860324
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| | ||||||||| |||| ||||||||||||| ||| | ||||||||||||||| |||||||||| |||  ||||||||||||||    
T  7860139 gttacaaaaattttagggagaggggatgatgcctcagtccaaggcagagaaaatcttcgggctcaaagaacacttacaaatgtatgtacatttacctccc 7860238  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaa 196  Q
    ||||||||||||||||| |||| ||||| |||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||    
T  7860239 tccaaaggcactagcggggctcaaacccaggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagttaa 7860324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 3201019 - 3200849
Alignment:
Q  12 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 111  Q
    ||||||||||||||| | |||| ||||||||||||||| ||||||| ||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  3201019 ttacaaaaattttagggcgaggagatggtgccccagtctaaggcagagaagatcttcaggctcaaagaacacttacaaaggtaattacatttacctccct 3200920  T
Q  112 ccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaag 183  Q
    |||||||||||||||  ||||||| || ||||||||   |||||||| ||||||||||||||| ||||||||    
T  3200919 ccaaaggcactagcgaggctcgaatccaggttctcttagattcaagatctgtctttttaccac-agaccaag 3200849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 13047156 - 13047306
Alignment:
Q  18 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 117  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||   |||||||||| ||||||||||||||||||    
T  13047156 aaattttagggtgaggggatggtgctccagtccaaggcagggaagatctttgggctcaaagagcactt---aaggtaattatatttacctccctccaaag 13047252  T
Q  118 gcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttacca 173  Q
      ||  |||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  13047253 --acatgcggggctcgaacccggattctctcgaattcaagacctgtctttttacca 13047306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 558432 - 558548
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  558432 gttacaaaaattttagggtgaggggatggtgccccattccaaggaagggaagaccttctagctcaaagagcacttacaaaagtaattacatttacctccc 558531  T
Q  111 tccaaaggcactagcgg 127  Q
    |||||||||||||||||    
T  558532 tccaaaggcactagcgg 558548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 33066723 - 33066582
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    ||||||||||  |||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| || ||||||||||||| |||||||    
T  33066723 aaaattttaggatgaggggatggtgccccagtccaaggtagagaagaccttcaggctcaaagagcacttacaaagatatttacatttacctctctccaaa 33066624  T
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaaga 158  Q
    | |||||| | ||||||||||||| ||||||| |||||||||    
T  33066623 gacactagtgaagctcgaacccggattctctcaaattcaaga 33066582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 4553561 - 4553723
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctc-cctccaaaggc 119  Q
    ||||||||||||||||||||||||||||| ||| ||| |||||||| ||| ||||||||| ||||||||| ||| ||| ||||||||| ||||||||  |    
T  4553561 ttttagagtgaggggatggtgccccagtctaagacagagaagacctccggactcaaagagtacttacaaatgtatttatatttacctctcctccaaaaac 4553660  T
Q  120 actagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaa 182  Q
    |||||| || |||||||| |   ||||||||||||||||| ||||||||||||| ||||||||    
T  4553661 actagctgaactcgaacctgaaatctctcgaattcaagacatgtctttttaccattagaccaa 4553723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 21487266 - 21487105
Alignment:
Q  32 ggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggagct 131  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||||  || || ||||||    
T  21487266 ggggatggtgccccagtctaaggcagggaagactttcgggctcaaagagcacttacaaaaatatttacatttacctccctccaaagataccagtggagct 21487167  T
Q  132 cgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    | |||   |||  ||| | |||||||||||||| |||||||||| ||| ||  |||||||||||    
T  21487166 caaacttaggt--tcttggattcaagacctgtcattttaccacttgactaaacctttggagtta 21487105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 2098939 - 2099016
Alignment:
Q  117 ggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||    
T  2098939 ggcactagcggagttcgaacctgggttctctcgaattcaagacctatcattttaccaatagaccaagcctttggagtt 2099016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 2098825 - 2098875
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagacctt 67  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2098825 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagacctt 2098875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 20961551 - 20961496
Alignment:
Q  80 gcacttacaaaggtaattacatttacctccctccaaaggcactagcggagctcgaa 135  Q
    ||||||||||| | | |||||||||||||||||||| |||||||||||||||||||    
T  20961551 gcacttacaaatggatttacatttacctccctccaagggcactagcggagctcgaa 20961496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 30477240 - 30477280
Alignment:
Q  72 ctcaaagagcacttacaaaggtaattacatttacctccctc 112  Q
    ||||||||| ||||||||||||| ||| |||||||||||||    
T  30477240 ctcaaagagaacttacaaaggtatttagatttacctccctc 30477280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 35163743 - 35163927
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35163743 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 35163842  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    |||||||||| ||| || |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  35163843 tccaaaggcattagtggggctcgaaccctggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtta 35163927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 19686820 - 19686991
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||| ||||||||| ||||||||||| |||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19686820 gttacagaaattttagggtgaggggatgatgccccagtctaagggaggaaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccc 19686919  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaa 182  Q
    | |||||||||||| || |||||||||| |||||||||  ||||||||||||| ||||||||||||||||||    
T  19686920 tacaaaggcactagaggggctcgaacccaggttctctcagattcaagacctgtttttttaccactagaccaa 19686991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 2711733 - 2711911
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||      |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  2711733 gttacaaaaattttagggtgaggggatggtg------tccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccc 2711826  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    |||||| ||||||| || ||||||| || |||||| ||| |||||||||||||| |||||||||||||||||| |||| ||||||    
T  2711827 tccaaaagcactagtggggctcgaatccaggttctatcggattcaagacctgtcattttaccactagaccaagcctttcgagtta 2711911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 20685465 - 20685348
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20685465 ggttacaaaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 20685366  T
Q  110 ctccaaaggcactagcgg 127  Q
    ||||||||||||||||||    
T  20685365 ctccaaaggcactagcgg 20685348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 14505519 - 14505700
Alignment:
Q  12 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| || ||||||  | |||||||||| |||||||||||||||||    
T  14505519 ttacaaaaattttag-gtgaggggatggtgccccagtccaaggcacggaagatcttcgcgcccaaagaatatttacaaaggt-attacatttacctccct 14505616  T
Q  112 ccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagttaa 196  Q
    ||||| |||||||||| |||||||  |||| ||||||| |||||| || ||| |||||||| |||||||||| ||||||||||||    
T  14505617 ccaaaagcactagcggggctcgaattcgggatctctcggattcaa-acttgtttttttacctctagaccaagcctttggagttaa 14505700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 17948814 - 17948703
Alignment:
Q  16 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 115  Q
    ||||||||||  |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  17948814 aaaaattttaaggtgaggggatggtgtcccagtccaagacagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctctctccaa 17948715  T
Q  116 aggcactagcgg 127  Q
    || |||||||||    
T  17948714 agacactagcgg 17948703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 15070247 - 15070152
Alignment:
Q  28 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcacta 123  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||    
T  15070247 gtgaggggatggtgccccagtctaaggcagggaagaccttcgggctcaatgaacacttacaaatgtaattatatttacctccctccaaaggcacta 15070152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 14496406 - 14496311
Alignment:
Q  96 ttacatttacctccctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttgga 191  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||    
T  14496406 ttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctttctttttaccactagaccaaacctttgga 14496311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 24336718 - 24336633
Alignment:
Q  47 gtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggagctc 132  Q
    ||||||||||||||||| |||| |||||||| | |||||||||| ||| ||||||||||||||||||||||| |||||| ||||||    
T  24336718 gtccaaggcagggaagatcttcaggctcaaaaaacacttacaaaagtatttacatttacctccctccaaagggactagcagagctc 24336633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 30054445 - 30054618
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30054445 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 30054544  T
Q  121 ctagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||||||| ||||||||||||||||||||| ||||||||| || |||||||||||||||||||| ||||||||||    
T  30054545 ctagcggggctcgaacccgggttctctcggattcaagacttgactttttaccactagaccaagcctttggagtt 30054618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 30370052 - 30370237
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||  |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30370052 ggttacatgaattttaaggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 30370151  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    |||||||| |||||| || |||||||||||| ||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  30370152 ctccaaagacactagtggggctcgaacccggattctctcgaattcaaaacttgtctttttaccactagaccaagcctttggagtta 30370237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 12025321 - 12025137
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |    
T  12025321 ggttacaaaaattttagggtgagggggtggtgccccagtccaaggcagggaagaccttcgggctcaaatagtacttacaaaggtaattacatttaccttc 12025222  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||||||||||||||  || |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  12025221 ctccaaaggcactaatggggctcgaacccaggttctctcgaattcaagatctgtatttttaccactagaccaagtctttggagtt 12025137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 20014597 - 20014414
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  20014597 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcaggctcaaagagcatttacaaatgtaattacatttacctccc 20014498  T
Q  111 tccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    |||||||| ||||||||  |||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||    
T  20014497 tccaaaggtactagcgggactcgaacccgggttctctcggattcaagatctgtctttttaccactagaccaagactttggagtt 20014414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 45324146 - 45323961
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  45324146 ggttgcaaaaattttagggtgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaggagcacttacaaaggtatttacatttacctcc 45324047  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtta 195  Q
    ||||||| |||||||||| ||| |||||| |||||||||| |||||||||||||| |||||||||||||||||| |||||||||||    
T  45324046 ctccaaaagcactagcggggctggaacccaggttctctcggattcaagacctgtcgttttaccactagaccaagcctttggagtta 45323961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 21090244 - 21090074
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| ||||    
T  21090244 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggca 21090145  T
Q  121 ctagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttgga 191  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  21090144 ctagcggggctcgaacccgaattctctcgaattcaagacctgtcattttaccactagaccaagcctttgga 21090074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 33763246 - 33763418
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||| ||||||||| ||||||||||| ||||||||| |||||||||||| || |||||||||||| | ||||||||||||||||||||||| |||||    
T  33763246 ggttacagaaattttagggtgaggggatgatgccccagttcaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctcc 33763345  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaa 182  Q
    ||| |||||||||||||| |||||||||  | |||||||||||||||||||||||||||||| ||||||||||    
T  33763346 ctctaaaggcactagcggggctcgaacctagattctctcgaattcaagacctgtctttttactactagaccaa 33763418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 4573517 - 4573359
Alignment:
Q  12 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 111  Q
    ||||||||||||||| |||||||||| ||||| ||||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  4573517 ttacaaaaattttagggtgaggggatagtgcctcagtccaaaacagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccct 4573418  T
Q  112 ccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtcttttta 170  Q
    |||||| || ||| || ||||||||||||||||||||| ||||||||||||||||||||    
T  4573417 ccaaagacattagtggggctcgaacccgggttctctcggattcaagacctgtcttttta 4573359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 22024242 - 22024128
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22024242 gttacataaattttagggtgaggggatggtgccccagtccaaggcagagaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcca 22024143  T
Q  111 tccaaaggcactagc 125  Q
    |||||||||||||||    
T  22024142 tccaaaggcactagc 22024128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 14498072 - 14498182
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  14498072 gttacaaaaattttagggtgaggggatggcgccccagtccaaggcagggaagacctttggtctcaaagagcacttacaaaggtaattacatttacctccc 14498171  T
Q  111 tccaaaggcac 121  Q
    |||||||||||    
T  14498172 tccaaaggcac 14498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 30850841 - 30850985
Alignment:
Q  19 aattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagg 118  Q
    |||||||| |||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||     
T  30850841 aattttagggtgaggggatggtgccccagtccaagacaggaaagaccttcgggttcaaagagcacttacaaaggcaattatatttacctccctccaaaga 30850940  T
Q  119 cactagcggagctcgaacccgggttctctcgaattcaagacctgt 163  Q
    ||||| ||| ||||||||||| ||||||||| ||| |||| ||||    
T  30850941 cactaacggggctcgaacccgagttctctcggatttaagatctgt 30850985  T

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Target: chr1; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 35618115 - 35617948
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||||| |||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||     ||||||||| |||    
T  35618115 ggttacaaaatttttagggtgaggggatggtaccccagtccaaagcaaggaagaccttcgggctcaaagagcacttacaaag----ctacatttacatcc 35618020  T
Q  110 ctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaa 182  Q
    ||  |||||||||| ||||||||||| |  |||||||| | |||||||||||||| |||||||||||||||||    
T  35618019 ct-gaaaggcactaacggagctcgaatctaggttctcttggattcaagacctgtcattttaccactagaccaa 35617948  T

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Target: chr1; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 33762532 - 33762646
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||| || |||||||||||| | ||||||||||||||||||||||| |||||    
T  33762532 ggttacaaaaattttagggtgaggggatgatgccccagtccaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctcc 33762631  T
Q  110 ctccaaaggcactag 124  Q
    ||| |||||||||||    
T  33762632 ctctaaaggcactag 33762646  T

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Target: chr1; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 44438562 - 44438694
Alignment:
Q  30 gaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggag 129  Q
    ||||||||||| ||||||| ||||||||||||||||||||   | ||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  44438562 gaggggatggtaccccagttcaaggcagggaagaccttcgaatttaaagaacacttacaaaagtaattacatttacctccctccaaaggcattagcggag 44438661  T
Q  130 ctcgaacccgggttctctcgaattcaagacctg 162  Q
    |||||||||   ||||||  |||||||||||||    
T  44438662 ctcgaacccaaattctcttaaattcaagacctg 44438694  T

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Target: chr1; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 35371755 - 35371833
Alignment:
Q  28 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacc 106  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35371755 gtgaggggatggtgccccagtccaaggcagggaagaacttcgggctcaaagagcacttacaaaggtaattacatttacc 35371833  T

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Target: chr1; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 15034501 - 15034411
Alignment:
Q  104 acctccctccaaaggcactagcggagctcgaacccgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    |||||||||||||||||||||  | ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  15034501 acctccctccaaaggcactagtagggctcgaacctgggttctttcggattcaagacctgtctttttaccactagaccaagcctttggagtt 15034411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 17015260 - 17015192
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 78  Q
    ||||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17015260 ggttacataaattttaggatgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaag 17015192  T

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Target: scaffold0691 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 43 - 194
Target Start/End: Original strand, 6994 - 7141
Alignment:
Q  43 cccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggagctcgaacccgggt 142  Q
    |||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||  ||||||||||| |    
T  6994 cccagtccaaggtagggaagaccttcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaacgcactagcgggactcgaacccggat 7093  T
Q  143 tctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 194  Q
    ||||||   ||| || |||||||||||||||||| | |||| ||||||||||    
T  7094 tctctc---ttcgagtcctgtctttttaccacta-aacaagcctttggagtt 7141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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