View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10218_low_16 (Length: 304)
Name: NF10218_low_16
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 40557409 - 40557123
Alignment:
| Q |
1 |
ttgactaatagaacttggctagagcttgacgagtgcgaagtagagttcaccacggcatctaaaagaccagagttgcacctttttcttggctttgaaacgg |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40557409 |
ttgactgatagaacttggctagagcttgacgagtgcgaagtagagttcaccacggcatctaaaagaccaaagttgcacctttttcttggctttgaaacgg |
40557310 |
T |
|
| Q |
101 |
ttttctgctacaagttcgttccatttgtttgtgataatgtagacctctccagtcaccattttccacttcttgaagcacatgtctttgtagagtataagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40557309 |
ttttctgctacaagttcgttccatttgtttgtgataatgtagacctctccagtcaccattttccacttcttgaagcacatgtctttgtagagtataagat |
40557210 |
T |
|
| Q |
201 |
tgggatccaacacggacacgtgcataccgacgatcttcttcctcccttttttcttttgaggcacataatccaaagacaattcctctg |
287 |
Q |
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|||||||||||||| ||||| ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40557209 |
tgggatccaacacgaacacgggcataccaacaatcttcttcctcccttttttattttgaggcacataatccaaagacaattcctctg |
40557123 |
T |
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