View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10218_low_2 (Length: 494)
Name: NF10218_low_2
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_low_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 2686324 - 2685849
Alignment:
| Q |
19 |
cagagacaaccctcttcaaaattcaaccaatagtcacctcaaaatcggtgacaatggaaacatagtacttctcaattcatcatcagattcagacaacaac |
118 |
Q |
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| T |
2686324 |
cagagacaaccctcttcaaaattcaaccaatagtcacctcaaaatcggtgacaatggaaacatagtacttctcaattcatcatcagattcagacaacaac |
2686225 |
T |
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| Q |
119 |
ctcatatggtcttcgaatcaaacaaaagctaccaacccacttgttcttcagcttttcgataatggaaatttagttctaagagaaacaaacgtgaatgatc |
218 |
Q |
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| T |
2686224 |
ctcatatggtcttccaatcaaacaaaagctaccaacccacttgttcttcagcttttcgataatggaaatttagttctaagagaaacaaacgtgaatgatc |
2686125 |
T |
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| Q |
219 |
cgacaaaatatctatggcaaagctttgattatccaacagatactttgttaccatccatgaatatcggttggaacttcgacaaaaacacagaaaaacactt |
318 |
Q |
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| T |
2686124 |
cgacaaaatatctatggcaaagctttgattatccaacagatactttgttaccatccatgaatatcggttggaacttcgacaaaaacacagaaaaacactt |
2686025 |
T |
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| Q |
319 |
aacatcatggaagaacactggtgaagatccttcaacaggtcattattcattcaaaattgattatcatggtttaccagagattttcctacggaatgatgat |
418 |
Q |
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| T |
2686024 |
aacatcatggaagaacactggtgaagatccttcaacaggtcattattcattcaaaattgattatcatggtttaccagagattttcctacggaatgatgat |
2685925 |
T |
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| Q |
419 |
aacataatatatcgaagtggaccatggaatggtgaaaggtttagtggtgtaccagagatgcaacatgatacagatt |
494 |
Q |
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| T |
2685924 |
aacataatatatcgaagtggaccatggaatggtgaaaggtttagtggtgtaccagagatgcaacatgatacagatt |
2685849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 2669927 - 2669967
Alignment:
| Q |
231 |
tatggcaaagctttgattatccaacagatactttgttacca |
271 |
Q |
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| T |
2669927 |
tatggcagagttttgatcatccaacagatactttgttacca |
2669967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 482
Target Start/End: Original strand, 36360942 - 36361212
Alignment:
| Q |
212 |
aatgatccgacaaaatatctatggcaaagctttgattatccaacagatactttgttaccatccatgaatatcggttggaacttcgacaaaaacacagaaa |
311 |
Q |
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| T |
36360942 |
aatgatccaacaaattttctatggcaaagttttgattaccctacagatactttgttacctggtatgaaacttggttggaacttcgacacgaacacagaaa |
36361041 |
T |
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| Q |
312 |
aacacttaacatcatggaagaacactggtgaagatccttcaacaggtcattattcattcaaaattgattatcatggtttaccagagattttcctacggaa |
411 |
Q |
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| T |
36361042 |
cacacataaattcatggaaacaaacagatcaagacccttcaattggtgatatatctttcaagatggattatcatggtgttccagaaatttttctttggaa |
36361141 |
T |
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| Q |
412 |
tgatgataacataatatatcgaagtggaccatggaatggtgaaaggtttagtggtgtaccagagatgcaac |
482 |
Q |
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| T |
36361142 |
caaaaatagaagagtttatagaagtggaccatggaatggtaaaagattcagtggtgtaccagagatgcaac |
36361212 |
T |
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