View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10218_low_24 (Length: 230)
Name: NF10218_low_24
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 13396898 - 13397099
Alignment:
| Q |
17 |
ctttcttcgtctgaggtgattgttcatgggataggcaaaaatgacttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaac |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13396898 |
ctttctccgtctgaggtgattgttcatgggataggcaaaaatgacttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaac |
13396997 |
T |
|
| Q |
117 |
acagttgatgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcataccaatgattttcttttctggacctaaatccttc |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13396998 |
acgagtgatgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcataccaatgattttctttgctggacctaaatccttc |
13397097 |
T |
|
| Q |
217 |
at |
218 |
Q |
| |
|
|| |
|
|
| T |
13397098 |
at |
13397099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 19944575 - 19944381
Alignment:
| Q |
24 |
cgtctgaggtgattgttcatgggataggcaaaaatgacttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacagttg |
123 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||| |||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
19944575 |
cgtctgaggtgattgttcttgggataggcgaaaatgacttgccaaaggtgtgctaaccagtttggcatcgcccatgttgaatctttgcaaaacacggttg |
19944476 |
T |
|
| Q |
124 |
atgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcataccaatgattttcttttctggacctaaatccttcat |
218 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||||||||||||| || ||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
19944475 |
atgtactccgcttgagataactgcaaaacacctttttgcttatctctcgtgatttgcataccaaggattttctttgctggacctaaatccttcat |
19944381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 31622651 - 31622739
Alignment:
| Q |
94 |
cccatgttgaatatttgcaaaacacagttgatgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcata |
183 |
Q |
| |
|
|||||||||||| || |||||||| ||||||| ||||| |||||||||||| |||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
31622651 |
cccatgttgaatctt-gcaaaacatggttgatgcactctgcttgagataactgcaaaactcctttatgcctatctcacatgatttgcata |
31622739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 6692625 - 6692431
Alignment:
| Q |
24 |
cgtctgaggtgattgttcatgggataggcaaaaatgacttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacagttg |
123 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||| |||||| |||||| |||||| |||||||||||| |||| |
|
|
| T |
6692625 |
cgtctgaggtgattgttcttgggataggcgaaaatgacttgccaaaggtgtgctaactagtttggcatcgcccatattgaatctttgcaaaacacggttg |
6692526 |
T |
|
| Q |
124 |
atgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcataccaatgattttcttttctggacctaaatccttcat |
218 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||||||||||||| || ||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
6692525 |
atgtactccgcttgagataactgcaaaacacctttttgcttatctctcgtgatttgcataccaaggattttctttgctggacctaaatccttcat |
6692431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 796196 - 796390
Alignment:
| Q |
24 |
cgtctgaggtgattgttcatgggataggcaaaaatgacttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacagttg |
123 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||| |||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
796196 |
cgtctgaggtgattgttcttgggataggcgaaaatgacttgccaaaggtgtgctaaccagtttggcatcgcccatgttgaatctttgcaaaacacggttg |
796295 |
T |
|
| Q |
124 |
atgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcataccaatgattttcttttctggacctaaatccttcat |
218 |
Q |
| |
|
|||||||| ||| |||||||| |||||| ||||||||||||||| || ||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
796296 |
atgtactccgcttaagataactgcaaaacacctttttgcttatctctcgtgatttgcataccaaggattttctttgctggacctaaatccttcat |
796390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 8273583 - 8273437
Alignment:
| Q |
72 |
tgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacagttgatgtactctacttgagataactacaaaactcctttttgcttatctatc |
171 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||| |||||||||||| |||||||||||| |||||||||||| |||||| ||||||||||||||| || |
|
|
| T |
8273583 |
tgtgctaaccagtttggcatcgcccatgttgaatctttgcaaaacacggttgatgtactccgcttgagataactgcaaaacacctttttgcttatctctc |
8273484 |
T |
|
| Q |
172 |
atgatttgcataccaatgattttcttttctggacctaaatccttcat |
218 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
8273483 |
gtgatttgcataccaaggattttctttgctggacctaaatccttcat |
8273437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University