View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10218_low_27 (Length: 221)
Name: NF10218_low_27
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 41784912 - 41784727
Alignment:
| Q |
20 |
ctttaatctcgcaagaaaaccttctttctcttccatcatagtttgttcagtagatctcatttcagctaactcctcttgcaactcacttttctggttgctt |
119 |
Q |
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| T |
41784912 |
ctttaacctcgcaagaaaaccttctttctcttccatcatagtttgttcagtagatctcatttcagctaactcctcttgcaactcacttttctggttgctt |
41784813 |
T |
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| Q |
120 |
tgtgtttccaatttgaattccatttcctttaaccgcgcaagaaaaccctctttctcttccatcatagtatgttcggttgatttcat |
205 |
Q |
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| T |
41784812 |
tgtgtttccaatttgaattccatttcctttaaccgcgcaagaaaaccctctttctcttccatcatagtatgttcggttgatttcat |
41784727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 41784972 - 41784865
Alignment:
| Q |
86 |
taactcctcttgcaactcacttttctggttgctttgtgtttccaatttgaattccatttcctttaaccgcgcaagaaaaccctctttctcttccatcata |
185 |
Q |
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| T |
41784972 |
taactgctcttccaactcatttctctgattgatttgagtttccaattcgagttccatgttctttaacctcgcaagaaaaccttctttctcttccatcata |
41784873 |
T |
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| Q |
186 |
gtatgttc |
193 |
Q |
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| T |
41784872 |
gtttgttc |
41784865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 41784786 - 41784718
Alignment:
| Q |
20 |
ctttaatctcgcaagaaaaccttctttctcttccatcatagtttgttcagtagatctcatttcagctaa |
88 |
Q |
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|||||| | |||||||||||| |||||||||||||||||||| ||||| || ||| ||||||| ||||| |
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| T |
41784786 |
ctttaaccgcgcaagaaaaccctctttctcttccatcatagtatgttcggttgatttcatttcggctaa |
41784718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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