View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10218_low_29 (Length: 215)

Name: NF10218_low_29
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10218_low_29
NF10218_low_29
[»] chr7 (12 HSPs)
chr7 (79-199)||(3198059-3198178)
chr7 (24-88)||(3196641-3196705)
chr7 (50-86)||(28703508-28703544)
chr7 (18-86)||(38858165-38858233)
chr7 (43-93)||(21411512-21411562)
chr7 (24-86)||(46987086-46987148)
chr7 (49-86)||(25246771-25246808)
chr7 (49-93)||(8615016-8615060)
chr7 (49-89)||(10029849-10029889)
chr7 (42-86)||(22267581-22267625)
chr7 (27-87)||(24991780-24991840)
chr7 (49-85)||(36731142-36731178)
[»] chr5 (11 HSPs)
chr5 (37-88)||(4763198-4763249)
chr5 (37-81)||(43135205-43135249)
chr5 (28-86)||(28604421-28604479)
chr5 (43-86)||(3955546-3955589)
chr5 (37-96)||(9123857-9123916)
chr5 (49-87)||(18489100-18489138)
chr5 (24-86)||(26409253-26409315)
chr5 (49-86)||(17338727-17338764)
chr5 (49-86)||(34206227-34206264)
chr5 (49-85)||(13409429-13409465)
chr5 (42-94)||(13547439-13547491)
[»] chr6 (10 HSPs)
chr6 (42-89)||(35110051-35110098)
chr6 (24-87)||(18254100-18254163)
chr6 (49-87)||(9923239-9923277)
chr6 (49-86)||(7083016-7083053)
chr6 (49-86)||(24373734-24373771)
chr6 (42-86)||(2105905-2105949)
chr6 (18-86)||(8381187-8381255)
chr6 (24-80)||(19554159-19554215)
chr6 (42-86)||(22576160-22576204)
chr6 (42-86)||(28592704-28592748)
[»] chr4 (13 HSPs)
chr4 (36-87)||(26008060-26008111)
chr4 (42-86)||(21266899-21266943)
chr4 (49-87)||(34247439-34247477)
chr4 (49-86)||(14577531-14577568)
chr4 (49-86)||(18915070-18915107)
chr4 (42-87)||(36071143-36071188)
chr4 (24-85)||(37921747-37921808)
chr4 (37-86)||(54500569-54500618)
chr4 (49-86)||(56497632-56497669)
chr4 (26-86)||(12671749-12671809)
chr4 (49-81)||(39093599-39093631)
chr4 (21-85)||(46676494-46676558)
chr4 (22-86)||(49473645-49473709)
[»] chr2 (21 HSPs)
chr2 (24-87)||(31397788-31397851)
chr2 (28-86)||(20517022-20517080)
chr2 (24-86)||(28771582-28771644)
chr2 (43-87)||(7792280-7792324)
chr2 (26-86)||(12124545-12124605)
chr2 (42-86)||(24548117-24548161)
chr2 (49-91)||(6141215-6141257)
chr2 (37-87)||(13000684-13000734)
chr2 (24-81)||(4137996-4138053)
chr2 (49-86)||(8387909-8387946)
chr2 (25-94)||(18324894-18324963)
chr2 (25-86)||(24593376-24593437)
chr2 (42-83)||(28202409-28202450)
chr2 (42-87)||(34471546-34471591)
chr2 (49-86)||(43117214-43117251)
chr2 (43-95)||(16385404-16385456)
chr2 (37-85)||(21295400-21295448)
chr2 (49-89)||(24520663-24520703)
chr2 (21-93)||(33832665-33832737)
chr2 (49-85)||(35685085-35685121)
chr2 (42-86)||(44488027-44488071)
[»] chr8 (7 HSPs)
chr8 (24-97)||(6235550-6235623)
chr8 (24-86)||(6099979-6100041)
chr8 (50-83)||(444127-444160)
chr8 (49-94)||(8910005-8910050)
chr8 (25-86)||(44293575-44293636)
chr8 (26-86)||(13575289-13575349)
chr8 (26-86)||(17704013-17704073)
[»] scaffold0328 (1 HSPs)
scaffold0328 (24-76)||(3348-3400)
[»] chr1 (8 HSPs)
chr1 (42-78)||(3136705-3136741)
chr1 (37-87)||(39492320-39492370)
chr1 (37-87)||(41926821-41926871)
chr1 (49-86)||(31890773-31890810)
chr1 (37-86)||(36371052-36371101)
chr1 (37-81)||(2817385-2817429)
chr1 (42-86)||(8153135-8153179)
chr1 (42-86)||(25165109-25165153)
[»] scaffold0025 (1 HSPs)
scaffold0025 (24-87)||(64217-64280)
[»] scaffold0334 (1 HSPs)
scaffold0334 (49-87)||(5181-5219)
[»] chr3 (13 HSPs)
chr3 (49-83)||(2662095-2662129)
chr3 (49-87)||(5428460-5428498)
chr3 (42-88)||(22843462-22843508)
chr3 (23-88)||(13042798-13042863)
chr3 (23-88)||(13050875-13050940)
chr3 (21-86)||(46226074-46226138)
chr3 (49-86)||(53429155-53429192)
chr3 (50-87)||(55198881-55198918)
chr3 (53-93)||(3604361-3604401)
chr3 (49-93)||(12131697-12131741)
chr3 (42-86)||(35392003-35392047)
chr3 (42-86)||(48376835-48376879)
chr3 (49-85)||(54230123-54230159)
[»] scaffold0005 (1 HSPs)
scaffold0005 (49-86)||(239807-239844)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 3198059 - 3198178
Alignment:
Q  79 aaactcacatagacaatttgagggtcaatcaaaaataatggtggcaccacaaagtttcgttatagttgagaaaacattgnnnnnnnccttttataacaag 178  Q
    ||||||||| |||||||||||||||||||| |||||||||| | |||||||||||||||||||| ||||||||||||||       ||||||||||||||    
T  3198059 aaactcacagagacaatttgagggtcaatcgaaaataatggagtcaccacaaagtttcgttatatttgagaaaacattg-aaaaaaccttttataacaag 3198157  T
Q  179 gttgatcccttgctctactta 199  Q
    |||||||||||||||||||||    
T  3198158 gttgatcccttgctctactta 3198178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 3196641 - 3196705
Alignment:
Q  24 ggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcacat 88  Q
    |||||||||||||| |||||| || ||||||| ||||||||||||||| ||||||||||||||||    
T  3196641 ggggttcgaatcacagaacttgcatatattatacattgtctttaccaactgagctaaactcacat 3196705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 28703544 - 28703508
Alignment:
Q  50 tattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||||||||||||||||| ||||||||||||||    
T  28703544 tattatgcattgtctttaccaactgagctaaactcac 28703508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 38858165 - 38858233
Alignment:
Q  18 gtatctggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||| ||| |||||| | |||| |||||| |||||||||| |||||||||||||||| |||| |||||    
T  38858165 gtatccgggattcgaacctcggaccttacatatattatgcactgtctttaccaattgaactaagctcac 38858233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 21411562 - 21411512
Alignment:
Q  43 ttacacatattatgcattgtctttaccaattgagctaaactcacatagaca 93  Q
    ||||| |||||||||||||||  |||||||| ||||||||||||| |||||    
T  21411562 ttacatatattatgcattgtccctaccaattaagctaaactcacaaagaca 21411512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 46987148 - 46987086
Alignment:
Q  24 ggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||||| | |||| ||| || ||||||||||||||| ||||||| |||||||| |||||    
T  46987148 ggggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 46987086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 25246808 - 25246771
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  25246808 atattatgcattgtctttatcaactgagctaaactcac 25246771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 8615060 - 8615016
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcacatagaca 93  Q
    ||||||||||||||| ||||||| |||||||| |||||| |||||    
T  8615060 atattatgcattgtccttaccaactgagctaagctcacaaagaca 8615016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 10029849 - 10029889
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcacata 89  Q
    |||||||| |||||||||||||||| || ||||||||||||    
T  10029849 atattatgtattgtctttaccaattaagttaaactcacata 10029889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 22267625 - 22267581
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||| |||||||||||||||| |||||| |||| |||||||||    
T  22267625 cttacatatattatgcattgtctctaccaactgagttaaactcac 22267581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 24991840 - 24991780
Alignment:
Q  27 gttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcaca 87  Q
    ||||||||| || | ||| || ||||||||||||||| ||||||| |||||||| ||||||    
T  24991840 gttcgaatcccgtatcttgcatatattatgcattgtccttaccaactgagctaagctcaca 24991780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 36731178 - 36731142
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactca 85  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  36731178 atattatgcattgtctttaccaatcgagttaaactca 36731142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 4763198 - 4763249
Alignment:
Q  37 cggaacttacacatattatgcattgtctttaccaattgagctaaactcacat 88  Q
    |||| |||||| |||||||||||||||||||||||||||| |||||||||||    
T  4763198 cggaccttacatatattatgcattgtctttaccaattgagttaaactcacat 4763249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 43135205 - 43135249
Alignment:
Q  37 cggaacttacacatattatgcattgtctttaccaattgagctaaa 81  Q
    |||| |||||| |||||||||||||||||||||||||||||||||    
T  43135205 cggaccttacatatattatgcattgtctttaccaattgagctaaa 43135249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 28604421 - 28604479
Alignment:
Q  28 ttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||| | |||| ||||||  |||||||||||||||||||||| ||||||||||||||    
T  28604421 ttcgaaccccggaccttacatttattatgcattgtctttaccaactgagctaaactcac 28604479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 3955589 - 3955546
Alignment:
Q  43 ttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||    
T  3955589 ttacatatattatgcattgtctttaccaattgaactaagctcac 3955546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 9123857 - 9123916
Alignment:
Q  37 cggaacttacacatattatgcattgtctttaccaattgagctaaactcacatagacaatt 96  Q
    |||| |||||| ||||||||||||||||||||||| |||| ||| ||||||  |||||||    
T  9123857 cggatcttacatatattatgcattgtctttaccaactgagttaagctcacagggacaatt 9123916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 18489100 - 18489138
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcaca 87  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  18489100 atattatgcattgtctataccaactgagctaaactcaca 18489138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 26409315 - 26409253
Alignment:
Q  24 ggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||||| | |||| |||||| |||||||||||||||  |||||| |||||||| |||||    
T  26409315 ggggttcgaaccccggaccttacatatattatgcattgtccataccaactgagctaagctcac 26409253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 17338727 - 17338764
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  17338727 atattatgtattgtctttaccaattgagctaagctcac 17338764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 34206264 - 34206227
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  34206264 atattatgcattgtctttaccaactgagttaaactcac 34206227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 13409465 - 13409429
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactca 85  Q
    |||||||||||||||||||| || |||||||||||||    
T  13409465 atattatgcattgtctttactaactgagctaaactca 13409429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 13547491 - 13547439
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcacatagacaa 94  Q
    |||||| | |||||||||| || ||||||||||||||||||| |||| |||||    
T  13547491 cttacatacattatgcattatccttaccaattgagctaaacttacatggacaa 13547439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 35110098 - 35110051
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcacata 89  Q
    |||||| |||||||||||| |||| |||||||||||||||||||||||    
T  35110098 cttacatatattatgcattatcttgaccaattgagctaaactcacata 35110051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 18254100 - 18254163
Alignment:
Q  24 ggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcaca 87  Q
    |||||||||||| |||| ||| ||  |||||||||||||| ||||||| |||||||| ||||||    
T  18254100 ggggttcgaatcccggaccttgcatgtattatgcattgtccttaccaactgagctaagctcaca 18254163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 9923277 - 9923239
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcaca 87  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  9923277 atattatgcattgtccttatcaattgagctaaactcaca 9923239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 7083016 - 7083053
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  7083016 atattatgcattgtccttaccaattgagctaagctcac 7083053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 24373734 - 24373771
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  24373734 atattatgcattgtctctaccaattgagttaaactcac 24373771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 2105949 - 2105905
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||| |||||||||||||| ||||||||  |||||||||||||    
T  2105949 cttacatatattatgcattgtttttaccaaccgagctaaactcac 2105905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 8381187 - 8381255
Alignment:
Q  18 gtatctggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||||||||||| |  ||| ||| || || |||||||||||||||||||| |||| ||| |||||    
T  8381187 gtatctggggttcgaaccctggaccttgcatatgttatgcattgtctttaccaactgagttaagctcac 8381255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 19554215 - 19554159
Alignment:
Q  24 ggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaa 80  Q
    ||||||||||||||  | ||| || ||||||||||||||||||||||| | ||||||    
T  19554215 ggggttcgaatcacaaaccttgcatatattatgcattgtctttaccaactaagctaa 19554159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 22576204 - 22576160
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||| ||||||| ||||||| ||||||| ||||||||||||||    
T  22576204 cttacatatattattcattgtccttaccaactgagctaaactcac 22576160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 28592704 - 28592748
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||| |||||||||||||||||| |||||||| |||| |||||    
T  28592704 cttacatatattatgcattgtctttgccaattgaactaagctcac 28592748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 26008060 - 26008111
Alignment:
Q  36 acggaacttacacatattatgcattgtctttaccaattgagctaaactcaca 87  Q
    ||||| ||| || ||||||||||||||||||||||||||| |||||||||||    
T  26008060 acggaccttgcatatattatgcattgtctttaccaattgaactaaactcaca 26008111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 21266899 - 21266943
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||| ||||||||||||||||||| |||||||||||| |||||    
T  21266899 cttacatatattatgcattgtctttaacaattgagctaagctcac 21266943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 34247477 - 34247439
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcaca 87  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  34247477 atattatgcattgtccttaccaactgagctaaactcaca 34247439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 14577531 - 14577568
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  14577531 atattatgcattgtccttaccaactgagctaaactcac 14577568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 18915070 - 18915107
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  18915070 atattatgcattgtccttaccaactgagctaaactcac 18915107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 36071188 - 36071143
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcaca 87  Q
    |||||| ||||||||||||||| ||||||| ||| |||||||||||    
T  36071188 cttacatatattatgcattgtccttaccaactgacctaaactcaca 36071143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 37921808 - 37921747
Alignment:
Q  24 ggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactca 85  Q
    |||||| ||||| |||| ||| || ||||||||||||||| |||| || |||||||||||||    
T  37921808 ggggtttgaatcccggaccttgcatatattatgcattgtccttactaactgagctaaactca 37921747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 54500618 - 54500569
Alignment:
Q  37 cggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||| |||||| |||||||||||||||| |||||| |||||||| |||||    
T  54500618 cggaccttacatatattatgcattgtctctaccaactgagctaagctcac 54500569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 56497632 - 56497669
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  56497632 atattatgcattgtccttaccaattgagctaagctcac 56497669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 12671749 - 12671809
Alignment:
Q  26 ggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||| | |||| ||| || || ||||||||||||| |||||| ||||||||||||||    
T  12671749 ggttcgaaccccggatcttgcatattttatgcattgtctataccaactgagctaaactcac 12671809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 39093599 - 39093631
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaa 81  Q
    ||||||||||||||| |||||||||||||||||    
T  39093599 atattatgcattgtccttaccaattgagctaaa 39093631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 46676494 - 46676558
Alignment:
Q  21 tctggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactca 85  Q
    ||||||| ||||| | |||| ||| || ||||||||||||||| ||||||| |||||||| ||||    
T  46676494 tctgggggtcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctca 46676558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 49473709 - 49473645
Alignment:
Q  22 ctggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||||||| | |||| ||| || ||||||||||||||| ||||||| || ||||| |||||    
T  49473709 ctggggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgggctaagctcac 49473645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 31397788 - 31397851
Alignment:
Q  24 ggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcaca 87  Q
    |||||||||||| |||| |||||| || ||||||||||||  ||||||||||||||| ||||||    
T  31397788 ggggttcgaatctcggaccttacatattttatgcattgtccctaccaattgagctaagctcaca 31397851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 20517080 - 20517022
Alignment:
Q  28 ttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||| | ||||||||| ||||||||||||||  ||||||| ||||||||||||||    
T  20517080 ttcgaatcccagaacttacatatattatgcattgttcttaccaactgagctaaactcac 20517022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 28771644 - 28771582
Alignment:
Q  24 ggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||||| | |||| ||| || ||||||||||||||| ||||||| ||||||||||||||    
T  28771644 ggggttcgaaccgcggatcttgcatatattatgcattgtccttaccaactgagctaaactcac 28771582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 7792324 - 7792280
Alignment:
Q  43 ttacacatattatgcattgtctttaccaattgagctaaactcaca 87  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||||    
T  7792324 ttacatatattatgcattgtctttatcaattgagctaaattcaca 7792280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 12124605 - 12124545
Alignment:
Q  26 ggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||| | |||| ||| || ||||||||||||||| ||||||| ||||||||||||||    
T  12124605 ggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaaactcac 12124545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 24548161 - 24548117
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||    
T  24548161 cttacatatattatgcattgtctataccaattgagttaaactcac 24548117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 6141257 - 6141215
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcacataga 91  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||    
T  6141257 atattatgcattgtccttaccaactgagataaactcacataga 6141215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 13000734 - 13000684
Alignment:
Q  37 cggaacttacacatattatgcattgtctttaccaattgagctaaactcaca 87  Q
    |||| |||||| |||||||||||| |||||||||| |||||||| ||||||    
T  13000734 cggaccttacatatattatgcattatctttaccaactgagctaagctcaca 13000684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 4138053 - 4137996
Alignment:
Q  24 ggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaa 81  Q
    |||||| ||||| |||| ||| || ||||||| ||||||| |||||||||||||||||    
T  4138053 ggggtttgaatctcggaccttgcatatattatacattgtccttaccaattgagctaaa 4137996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 8387909 - 8387946
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  8387909 atattatgcattgtccttaccaattgagttaaactcac 8387946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 18324894 - 18324963
Alignment:
Q  25 gggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcacatagacaa 94  Q
    |||||||||||   || ||| || ||||||||||||||| ||||||| |||| ||| |||||||||||||    
T  18324894 gggttcgaatcctagatcttgcatatattatgcattgtccttaccaactgagttaagctcacatagacaa 18324963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 24593437 - 24593376
Alignment:
Q  25 gggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||||||| | |||| ||| || ||||||||||||||| ||||||| |||||||| |||||    
T  24593437 gggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 24593376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 28202450 - 28202409
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaact 83  Q
    |||||| |||||||||||||||  ||||||||||||||||||    
T  28202450 cttacatatattatgcattgtccataccaattgagctaaact 28202409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 34471546 - 34471591
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcaca 87  Q
    |||||| ||||| ||||||||| |||||||||||| ||||||||||    
T  34471546 cttacatatattttgcattgtcattaccaattgagttaaactcaca 34471591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 43117214 - 43117251
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  43117214 atattatgcattgtccttaccaactgagctaaactcac 43117251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 16385456 - 16385404
Alignment:
Q  43 ttacacatattatgcattgtctttaccaattgagctaaactcacatagacaat 95  Q
    ||||| ||||||||||||||||||||||| | | ||||| ||| |||||||||    
T  16385456 ttacatatattatgcattgtctttaccaacttaactaaattcatatagacaat 16385404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 21295448 - 21295400
Alignment:
Q  37 cggaacttacacatattatgcattgtctttaccaattgagctaaactca 85  Q
    |||| |||||| || |||||||||||| ||||||| |||||||||||||    
T  21295448 cggatcttacatattttatgcattgtcattaccaactgagctaaactca 21295400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 24520663 - 24520703
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcacata 89  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  24520663 atattatgcattgtctttaccaactaagctaagctcacata 24520703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 33832665 - 33832737
Alignment:
Q  21 tctggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcacatagaca 93  Q
    ||||| ||||||||| | ||  ||||| ||||||||||||||| |||||||  ||||||| |||||| |||||    
T  33832665 tctggagttcgaatctcagacattacatatattatgcattgtcgttaccaaccgagctaagctcacaaagaca 33832737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 35685085 - 35685121
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactca 85  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  35685085 atattatgcattgtccttaccaactgagctaaactca 35685121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 44488027 - 44488071
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||| ||||||||||||||| ||||||| ||| ||||||||||    
T  44488027 cttacatatattatgcattgtccttaccaactgaactaaactcac 44488071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 6235550 - 6235623
Alignment:
Q  24 ggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcacatagacaattt 97  Q
    |||||| ||||| |||| |||||| ||||||||||| |||  |||||| |||||||||||||||  ||||||||    
T  6235550 ggggtttgaatcccggaccttacatatattatgcatcgtccataccaactgagctaaactcacaaggacaattt 6235623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 6099979 - 6100041
Alignment:
Q  24 ggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||||||| | || || ||| |||||||||||||||||||  |||||||||||| ||||    
T  6099979 ggggttcgaatctcagacctcacatatattatgcattgtctttataaattgagctaaattcac 6100041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 444160 - 444127
Alignment:
Q  50 tattatgcattgtctttaccaattgagctaaact 83  Q
    |||||||||||||||||||||| |||||||||||    
T  444160 tattatgcattgtctttaccaactgagctaaact 444127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 8910005 - 8910050
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcacatagacaa 94  Q
    ||||||||||||||| ||||||| |||||||| ||||||| |||||    
T  8910005 atattatgcattgtccttaccaactgagctaagctcacatggacaa 8910050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 44293636 - 44293575
Alignment:
Q  25 gggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||||||| | | || |||||| |||||||||||||||| |||||| |||||||| |||||    
T  44293636 gggttcgaaccccagatcttacatatattatgcattgtctataccaactgagctaagctcac 44293575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 13575349 - 13575289
Alignment:
Q  26 ggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||| | |||||||| || || ||||||||||||  |||||| ||||||||||||||    
T  13575349 ggttcgaacctcggaacttgcatatgttatgcattgtccctaccaactgagctaaactcac 13575289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 17704073 - 17704013
Alignment:
Q  26 ggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||| ||||||| || ||| || ||||||||||||||| ||||||| |||||||| |||||    
T  17704073 ggtttgaatcacagaccttgcatatattatgcattgtccttaccaactgagctaagctcac 17704013  T

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Target: scaffold0328 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 3348 - 3400
Alignment:
Q  24 ggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgag 76  Q
    |||||||||||| |||| ||||||  |||||||||||||| ||||||||||||    
T  3348 ggggttcgaatctcggaccttacatctattatgcattgtccttaccaattgag 3400  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 3136705 - 3136741
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagct 78  Q
    |||||| ||||||||||||||||||||||||||||||    
T  3136705 cttacatatattatgcattgtctttaccaattgagct 3136741  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 39492370 - 39492320
Alignment:
Q  37 cggaacttacacatattatgcattgtctttaccaattgagctaaactcaca 87  Q
    |||| |||||| |||||||||||||||||||  ||||||| ||||||||||    
T  39492370 cggaccttacatatattatgcattgtctttattaattgagttaaactcaca 39492320  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 41926871 - 41926821
Alignment:
Q  37 cggaacttacacatattatgcattgtctttaccaattgagctaaactcaca 87  Q
    |||| |||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  41926871 cggaccttacatatattatgcattgtccttaccaactgagctaagctcaca 41926821  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 31890773 - 31890810
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  31890773 atattatgcattgtccttaccaactgagctaaactcac 31890810  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 36371052 - 36371101
Alignment:
Q  37 cggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||| |||||| |||||||||||||||| |||||| |||||||| |||||    
T  36371052 cggaccttacatatattatgcattgtctctaccaactgagctaagctcac 36371101  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 2817385 - 2817429
Alignment:
Q  37 cggaacttacacatattatgcattgtctttaccaattgagctaaa 81  Q
    |||| |||||| ||||||||||||||| ||||||| |||||||||    
T  2817385 cggaccttacatatattatgcattgtccttaccaactgagctaaa 2817429  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 8153179 - 8153135
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||| |||||||||||||||| |||||| |||| |||||||||    
T  8153179 cttacatatattatgcattgtctataccaactgagttaaactcac 8153135  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 25165109 - 25165153
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||| |||||||||||||||  ||||||||||| |||||||||    
T  25165109 cttacatatattatgcattgtccataccaattgagttaaactcac 25165153  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 64280 - 64217
Alignment:
Q  24 ggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcaca 87  Q
    |||||||||||| |||| ||| || |||||||||||||||  ||||| ||||||||| ||||||    
T  64280 ggggttcgaatcccggaccttgcatatattatgcattgtccataccagttgagctaagctcaca 64217  T

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Target: scaffold0334 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 5219 - 5181
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcaca 87  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  5219 atattatgcattgtccataccaattgagctaaactcaca 5181  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 2662129 - 2662095
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaact 83  Q
    ||||||||||||||||||||||| |||||||||||    
T  2662129 atattatgcattgtctttaccaactgagctaaact 2662095  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 5428460 - 5428498
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcaca 87  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  5428460 atattatgcattgtttttatcaattgagctaaactcaca 5428498  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 22843508 - 22843462
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcacat 88  Q
    |||||| |||||||||||||||||||| || |||||||| |||||||    
T  22843508 cttacatatattatgcattgtctttactaactgagctaagctcacat 22843462  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 13042798 - 13042863
Alignment:
Q  23 tggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcacat 88  Q
    ||||||||||| | |||| ||| || |||||||  |||||||||||||| |||||||| |||||||    
T  13042798 tggggttcgaaccccggaccttgcatatattataaattgtctttaccaactgagctaagctcacat 13042863  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 13050875 - 13050940
Alignment:
Q  23 tggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcacat 88  Q
    ||||||||||| | |||| ||| || |||||||  |||||||||||||| |||||||| |||||||    
T  13050875 tggggttcgaaccccggaccttgcatatattataaattgtctttaccaactgagctaagctcacat 13050940  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 46226074 - 46226138
Alignment:
Q  21 tctggggttcgaatcacggaacttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||||||||||| | |||| ||| || |||||||||||||||  ||||||||||| |||||||||    
T  46226074 tctggggttcgaacc-cggaccttgcatatattatgcattgtccctaccaattgagttaaactcac 46226138  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 53429192 - 53429155
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  53429192 atattatgcattgtctataccaactgagctaaactcac 53429155  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 55198918 - 55198881
Alignment:
Q  50 tattatgcattgtctttaccaattgagctaaactcaca 87  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  55198918 tattatgcattgtccttaccaactgagctaaactcaca 55198881  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 3604361 - 3604401
Alignment:
Q  53 tatgcattgtctttaccaattgagctaaactcacatagaca 93  Q
    ||||||||||||||||||| |||| |||||||||| |||||    
T  3604361 tatgcattgtctttaccaactgagttaaactcacagagaca 3604401  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 12131697 - 12131741
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcacatagaca 93  Q
    |||||||||||||||| |||||||||| |||| |||||| |||||    
T  12131697 atattatgcattgtctataccaattgaactaagctcacaaagaca 12131741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 35392047 - 35392003
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||| |||||||| |||||| ||||||| ||||||||||||||    
T  35392047 cttacatatattatgtattgtcattaccaactgagctaaactcac 35392003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 48376879 - 48376835
Alignment:
Q  42 cttacacatattatgcattgtctttaccaattgagctaaactcac 86  Q
    |||||| |||||||||||| |||||||||| |||||||| |||||    
T  48376879 cttacatatattatgcattatctttaccaactgagctaagctcac 48376835  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 54230123 - 54230159
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactca 85  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  54230123 atattatgcattgtccttaccaactgagctaaactca 54230159  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 239844 - 239807
Alignment:
Q  49 atattatgcattgtctttaccaattgagctaaactcac 86  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  239844 atattatgcattgtccttaccaactgagctaaactcac 239807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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