View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10218_low_4 (Length: 474)

Name: NF10218_low_4
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10218_low_4
NF10218_low_4
[»] chr1 (10 HSPs)
chr1 (12-266)||(26233702-26233958)
chr1 (282-459)||(26234606-26234787)
chr1 (15-151)||(44938803-44938939)
chr1 (95-132)||(44291142-44291179)
chr1 (96-151)||(10449456-10449511)
chr1 (105-134)||(10449552-10449581)
chr1 (106-151)||(28739418-28739463)
chr1 (103-132)||(28810062-28810091)
chr1 (19-76)||(47557279-47557336)
chr1 (17-53)||(44381933-44381969)
[»] chr8 (8 HSPs)
chr8 (344-451)||(37672353-37672460)
chr8 (17-67)||(6894091-6894141)
chr8 (17-117)||(40580542-40580638)
chr8 (105-151)||(39139845-39139891)
chr8 (97-146)||(4531839-4531888)
chr8 (104-132)||(18183151-18183179)
chr8 (406-450)||(26812800-26812844)
chr8 (96-132)||(31470839-31470875)
[»] chr3 (7 HSPs)
chr3 (17-151)||(29081614-29081749)
chr3 (40-151)||(32385366-32385478)
chr3 (26-121)||(22893938-22894033)
chr3 (106-151)||(11512395-11512440)
chr3 (95-132)||(53299822-53299859)
chr3 (103-151)||(17547057-17547105)
chr3 (103-151)||(22894001-22894049)
[»] chr6 (3 HSPs)
chr6 (95-151)||(16193823-16193879)
chr6 (17-59)||(11448158-11448199)
chr6 (106-151)||(2543848-2543893)
[»] chr5 (8 HSPs)
chr5 (17-130)||(7137656-7137773)
chr5 (95-133)||(34394691-34394729)
chr5 (96-147)||(12605650-12605701)
chr5 (95-133)||(5998555-5998593)
chr5 (103-133)||(20986462-20986492)
chr5 (95-128)||(4376381-4376414)
chr5 (105-146)||(22097487-22097528)
chr5 (38-74)||(9904267-9904303)
[»] scaffold0001 (1 HSPs)
scaffold0001 (15-136)||(507729-507851)
[»] chr2 (3 HSPs)
chr2 (15-132)||(44000800-44000915)
chr2 (103-151)||(7755344-7755392)
chr2 (76-133)||(18182528-18182585)
[»] chr7 (5 HSPs)
chr7 (95-133)||(42494864-42494902)
chr7 (34-76)||(46436117-46436159)
chr7 (106-151)||(7211868-7211913)
chr7 (106-151)||(17272707-17272752)
chr7 (95-147)||(32315719-32315771)
[»] scaffold1315 (1 HSPs)
scaffold1315 (95-151)||(1821-1877)
[»] scaffold1293 (1 HSPs)
scaffold1293 (95-151)||(194-250)
[»] chr4 (2 HSPs)
chr4 (95-150)||(30023639-30023694)
chr4 (95-132)||(11392392-11392429)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 26233702 - 26233958
Alignment:
Q  12 ttggattggtgatattggtgacattaatcaaccacaatgttataagtgattttcttttttct-cttcacaaagttatttcgttcttttgtatacttgtga 110  Q
    |||||||| |||||||| ||| ||| | |||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||||| |    
T  26233702 ttggattgatgatattgatgatattgaccaaccacaatgttataagtgattttctttttttttcttcacaaggttatttcgttcttttatatacttgtaa 26233801  T
Q  111 cattgtggttgaccaatgtcacaaactacgatgtcacccaac-aagtattattcatgaataacatagaagatagtggattttctgaaaataactgatagc 209  Q
    |||||||||||||||||||||| || ||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26233802 cattgtggttgaccaatgtcaccaattacaatgtcactcaactaagtattattcatgaataacatagaagatagtggattttctgaaaataactgatagc 26233901  T
Q  210 acataagttagttgattaaatttgaggtgttatgcaaaattatctattaaacaaact 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  26233902 acataagttagttgattaaatttgaggtgttatgcaaaattatctgttaaaccaact 26233958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 282 - 459
Target Start/End: Original strand, 26234606 - 26234787
Alignment:
Q  282 caattagtgttagtgttgaaaatc----agttccaaataccacaatggagagcgaaaccaaactagttaaccagaataagaatatggatgtgttggatat 377  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26234606 caattagtgttagtgttgaaaatcaatcagttccaaataccacaatggagagtgaaaccaaactagttaaccagaataagaatatggatgtgttggatat 26234705  T
Q  378 cctcaaagaaactgtaaccatctatttcaaaaatatcaacttcataatcttcacttttctcacttctcttccttattatttc 459  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26234706 cctcaaaaaaactgtaaccatctatttcaaaaatatcaacttcataatcttcacttttctcacttctcttccttattttttc 26234787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 44938939 - 44938803
Alignment:
Q  15 gattggtgatattggtgacattaatcaaccacaatgttataagtgattttcttttttctctt-cacaaagttatttcgttcttttgtatacttgtgacat 113  Q
    |||| |||| ||| |||||||| | ||||||||||| || |||||  |||||| |||||||| ||||||||| |||  || ||||||| |||||||||||    
T  44938939 gattagtgacattagtgacattgaacaaccacaatggtacaagtggctttcttctttctctttcacaaagttttttaatt-ttttgtacacttgtgacat 44938841  T
Q  114 tgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    | ||||||  ||||||||| ||| || |||||||||||    
T  44938840 tctggttggtcaatgtcactaaccacaatgtcacccaa 44938803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 44291142 - 44291179
Alignment:
Q  95 ttttgtatacttgtgacattgtggttgaccaatgtcac 132  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  44291142 ttttgtacacttgtgacattgtggttgaccaatgtcac 44291179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 10449511 - 10449456
Alignment:
Q  96 tttgtatacttgtgacattgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    |||||| |||||||||||||||||||  ||||||||| ||| || |||||||||||    
T  10449511 tttgtacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaa 10449456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 134
Target Start/End: Original strand, 10449552 - 10449581
Alignment:
Q  105 ttgtgacattgtggttgaccaatgtcacaa 134  Q
    ||||||||||||||||||||||||||||||    
T  10449552 ttgtgacattgtggttgaccaatgtcacaa 10449581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 28739418 - 28739463
Alignment:
Q  106 tgtgacattgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    |||||||||||||||| |||||||||| ||| || |||||||||||    
T  28739418 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaa 28739463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 132
Target Start/End: Original strand, 28810062 - 28810091
Alignment:
Q  103 acttgtgacattgtggttgaccaatgtcac 132  Q
    ||||||||||||||||||||||||||||||    
T  28810062 acttgtgacattgtggttgaccaatgtcac 28810091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 47557279 - 47557336
Alignment:
Q  19 ggtgatattggtgacattaatcaaccacaatgttataagtgattttcttttttctctt 76  Q
    |||||||| |||||||||   |||||||||||||| |||||| ||| |||||||||||    
T  47557279 ggtgatataggtgacattgtccaaccacaatgttacaagtgacttttttttttctctt 47557336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 44381933 - 44381969
Alignment:
Q  17 ttggtgatattggtgacattaatcaaccacaatgtta 53  Q
    |||||||||||||||||||| | ||||||||||||||    
T  44381933 ttggtgatattggtgacattgaccaaccacaatgtta 44381969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 344 - 451
Target Start/End: Original strand, 37672353 - 37672460
Alignment:
Q  344 ttaaccagaataagaatatggatgtgttggatatcctcaaagaaactgtaaccatctatttcaaaaatatcaacttcataatcttcacttttctcacttc 443  Q
    |||| ||||| ||||| || ||||| || ||||||||    |||||| ||||||||||||||||||| || |||||||| ||||||||||| ||||||||    
T  37672353 ttaagcagaagaagaacattgatgtcttagatatcctgggtgaaactctaaccatctatttcaaaaacataaacttcatcatcttcactttactcacttc 37672452  T
Q  444 tcttcctt 451  Q
     |||||||    
T  37672453 acttcctt 37672460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 6894141 - 6894091
Alignment:
Q  17 ttggtgatattggtgacattaatcaaccacaatgttataagtgattttctt 67  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||    
T  6894141 ttggtgatattggtgacattgatcaaccacaatgtcataagtggttttctt 6894091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 40580638 - 40580542
Alignment:
Q  17 ttggtgatattggtgacattaatcaaccacaatgttataagtgattttcttttttctcttcacaaagttatttcgttcttttgtatacttgtgacattgt 116  Q
    |||||||||||||| |||||  ||||||||||||||| |  ||| ||||||||||||||| |||||| | ||   || ||||||| ||||||||||||||    
T  40580638 ttggtgatattggtaacattggtcaaccacaatgttacagatgagtttcttttttctctt-acaaagatgtt---tttttttgtacacttgtgacattgt 40580543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 39139845 - 39139891
Alignment:
Q  105 ttgtgacattgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    ||||||||||||| |||||||||||||| || ||| |||||||||||    
T  39139845 ttgtgacattgtgattgaccaatgtcaccaaatactatgtcacccaa 39139891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 4531839 - 4531888
Alignment:
Q  97 ttgtatacttgtgacattgtggttgaccaatgtcacaaactacgatgtca 146  Q
    |||||||||||||||||||||||||  |||| |||| |||||| ||||||    
T  4531839 ttgtatacttgtgacattgtggttggtcaatatcaccaactacaatgtca 4531888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 18183151 - 18183179
Alignment:
Q  104 cttgtgacattgtggttgaccaatgtcac 132  Q
    |||||||||||||||||||||||||||||    
T  18183151 cttgtgacattgtggttgaccaatgtcac 18183179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 450
Target Start/End: Original strand, 26812800 - 26812844
Alignment:
Q  406 aaaaatatcaacttcataatcttcacttttctcacttctcttcct 450  Q
    |||||| |||| || || |||||||||||||||||||||||||||    
T  26812800 aaaaatttcaattttatgatcttcacttttctcacttctcttcct 26812844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 31470839 - 31470875
Alignment:
Q  96 tttgtatacttgtgacattgtggttgaccaatgtcac 132  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  31470839 tttgtacacttgtgacattgtggttggccaatgtcac 31470875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 29081614 - 29081749
Alignment:
Q  17 ttggtgatattggtgacattaatcaaccacaatgttataagtgattttcttttttctctt-cacaaagttatttcgttcttttgtatacttgtgacattg 115  Q
    ||||||| || ||||||||| | |||||||||||| | ||||   |||||| ||||| || || |||||| |||  || ||||||| |||||||||||||    
T  29081614 ttggtgacatcggtgacattgaccaaccacaatgtcacaagtagctttcttctttctttttcataaagtttttttttttttttgtacacttgtgacattg 29081713  T
Q  116 tggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    ||||||||||||||||| ||| || || ||||||||    
T  29081714 tggttgaccaatgtcaccaaccacaatatcacccaa 29081749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 32385478 - 32385366
Alignment:
Q  40 caaccacaatgttataagtgattttcttttttctctt-cacaa-agttatttcgttcttttgtatacttgtgacattgtggttgaccaatgtcacaaact 137  Q
    |||||||||||||| ||||| ||||||| |||||||| ||||| | |||||| |||  |||||| |||||| ||||||||||||||||||||||| ||      
T  32385478 caaccacaatgttaaaagtgtttttcttctttctctttcacaatatttattt-gtttatttgtacacttgtcacattgtggttgaccaatgtcaccaatc 32385380  T
Q  138 acgatgtcacccaa 151  Q
    || |||||||||||    
T  32385379 acaatgtcacccaa 32385366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 22894033 - 22893938
Alignment:
Q  26 ttggtgacattaatcaaccacaatgttataagtgattttcttttttctcttcacaaagttatttcgttcttttgtatacttgtgacattgtggttg 121  Q
    ||||||||||| | |||||||||||| | |||||| |||||| ||| |||| |  ||| | ||| ||| ||||||| |||||| ||||||||||||    
T  22894033 ttggtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagattttttgttgttttgtacacttgtaacattgtggttg 22893938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 11512440 - 11512395
Alignment:
Q  106 tgtgacattgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    |||||||||||||||| |||||||||| ||| || |||||||||||    
T  11512440 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaa 11512395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 53299822 - 53299859
Alignment:
Q  95 ttttgtatacttgtgacattgtggttgaccaatgtcac 132  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  53299822 ttttgtacacttgtgacattgtggttggccaatgtcac 53299859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 17547057 - 17547105
Alignment:
Q  103 acttgtgacattgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    |||||||||||| ||||||||||||||||| || | | |||||||||||    
T  17547057 acttgtgacattatggttgaccaatgtcaccaaatgctatgtcacccaa 17547105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 22894001 - 22894049
Alignment:
Q  103 acttgtgacattgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    |||||||||||||||||||  ||||||||| ||| || |||||||||||    
T  22894001 acttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaa 22894049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 16193823 - 16193879
Alignment:
Q  95 ttttgtatacttgtgacattgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    ||||||| |||||||||||||||||||||||||||||| ||| || |||||||||||    
T  16193823 ttttgtacacttgtgacattgtggttgaccaatgtcaccaaccacaatgtcacccaa 16193879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 11448199 - 11448158
Alignment:
Q  17 ttggtgatattggtgacattaatcaaccacaatgttataagtg 59  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  11448199 ttggtgatattggtgacatt-accaaccacaatgttataagtg 11448158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 2543848 - 2543893
Alignment:
Q  106 tgtgacattgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    |||||||||||||||| |||||||||| ||| || |||||||||||    
T  2543848 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaa 2543893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 7137656 - 7137773
Alignment:
Q  17 ttggtgatattggtgacattaatcaaccacaatgttataagtgattttcttttttctc-ttcacaaagtt---atttcgttcttttgtatacttgtgaca 112  Q
    ||||||| |||||||||||| | |||||||||||| | |||||| ||||||  ||||| |||||||||||    |||  || |||| || ||||||||||    
T  7137656 ttggtgaaattggtgacattgaccaaccacaatgtcacaagtgactttcttcattctctttcacaaagttttatttttatttttttatacacttgtgaca 7137755  T
Q  113 ttgtggttgaccaatgtc 130  Q
    ||||||||||||||||||    
T  7137756 ttgtggttgaccaatgtc 7137773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 34394729 - 34394691
Alignment:
Q  95 ttttgtatacttgtgacattgtggttgaccaatgtcaca 133  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  34394729 ttttgtacacttgtgacattgtggttgaccaatgtcaca 34394691  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 12605650 - 12605701
Alignment:
Q  96 tttgtatacttgtgacattgtggttgaccaatgtcacaaactacgatgtcac 147  Q
    |||||| || ||||||||||||||||||||||||||| ||| || |||||||    
T  12605650 tttgtacacgtgtgacattgtggttgaccaatgtcaccaaccacaatgtcac 12605701  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 5998593 - 5998555
Alignment:
Q  95 ttttgtatacttgtgacattgtggttgaccaatgtcaca 133  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  5998593 ttttgtacacttctgacattgtggttgaccaatgtcaca 5998555  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 133
Target Start/End: Complemental strand, 20986492 - 20986462
Alignment:
Q  103 acttgtgacattgtggttgaccaatgtcaca 133  Q
    |||||||||||||||||||||||||||||||    
T  20986492 acttgtgacattgtggttgaccaatgtcaca 20986462  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 4376414 - 4376381
Alignment:
Q  95 ttttgtatacttgtgacattgtggttgaccaatg 128  Q
    ||||||| ||||||||||||||||||||||||||    
T  4376414 ttttgtacacttgtgacattgtggttgaccaatg 4376381  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 22097487 - 22097528
Alignment:
Q  105 ttgtgacattgtggttgaccaatgtcacaaactacgatgtca 146  Q
    |||||||||||| ||||||||||||||| |||||| ||||||    
T  22097487 ttgtgacattgtagttgaccaatgtcaccaactacaatgtca 22097528  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 9904303 - 9904267
Alignment:
Q  38 atcaaccacaatgttataagtgattttcttttttctc 74  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  9904303 atcaaccataatgttataagtgattttcttttctctc 9904267  T

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Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 507729 - 507851
Alignment:
Q  15 gattggtgatattggtgacattaatcaaccacaatgttataagtgattttcttttttctctt-cacaaagttatttcgttcttttgtatacttgtgacat 113  Q
    ||||| ||| |||||||||||| | ||| |||||| ||| |||||  |||||| |||||||| |||||  || |||  ||  ||||||||||| ||||||    
T  507729 gattgatgacattggtgacattgaccaatcacaatattacaagtggatttcttctttctctttcacaagatttttttattgctttgtatacttatgacat 507828  T
Q  114 tgtggttgaccaatgtcacaaac 136  Q
    |||||| ||||||||||||||||    
T  507829 tgtggtcgaccaatgtcacaaac 507851  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 44000800 - 44000915
Alignment:
Q  15 gattggtgatattggtgacattaatcaaccacaatgttataagtgattttcttttttctcttcacaaagttatttcgttcttttgtatacttgtgacatt 114  Q
    ||||| |||||||||||||| |  |||||||||||||  |||||| |||| |||||||| |||| || ||| |||  || |||| || |||| |||||||    
T  44000800 gattgatgatattggtgacactggtcaaccacaatgtcgtaagtggtttt-ttttttcttttcataaggttttttttttttttt-tacacttatgacatt 44000897  T
Q  115 gtggttgaccaatgtcac 132  Q
    ||||||||||||||||||    
T  44000898 gtggttgaccaatgtcac 44000915  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 7755392 - 7755344
Alignment:
Q  103 acttgtgacattgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    ||||||||||||||||||| |||||||||| ||| || |||||||||||    
T  7755392 acttgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaa 7755344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 18182585 - 18182528
Alignment:
Q  76 tcacaaagttatttcgttcttttgtatacttgtgacattgtggttgaccaatgtcaca 133  Q
    |||||||| | ||| ||| ||| ||| ||||||||||||||||||| |||||||||||    
T  18182585 tcacaaagattttttgttttttggtacacttgtgacattgtggttggccaatgtcaca 18182528  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 42494864 - 42494902
Alignment:
Q  95 ttttgtatacttgtgacattgtggttgaccaatgtcaca 133  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  42494864 ttttgtatacttgtaacattgtggttgaccaatgtcaca 42494902  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 46436117 - 46436159
Alignment:
Q  34 attaatcaaccacaatgttataagtgattttcttttttctctt 76  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||    
T  46436117 attagtcaaccacaatgtcataagtgattttcttctttctctt 46436159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 7211913 - 7211868
Alignment:
Q  106 tgtgacattgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    |||||||||||||||| |||||||||| ||| || |||||||||||    
T  7211913 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaa 7211868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 17272752 - 17272707
Alignment:
Q  106 tgtgacattgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    |||||||||||||||| |||||||||| ||| || |||||||||||    
T  17272752 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaa 17272707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 32315771 - 32315719
Alignment:
Q  95 ttttgtatacttgtgacattgtggttgaccaatgtcacaaactacgatgtcac 147  Q
    ||||||| | ||||||||||||||||| |||||||||| ||| || |||||||    
T  32315771 ttttgtacaattgtgacattgtggttggccaatgtcaccaaccacaatgtcac 32315719  T

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Target: scaffold1315 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 1877 - 1821
Alignment:
Q  95 ttttgtatacttgtgacattgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    ||||||| |||||||| ||||||||||| ||||||||| ||| || |||||||||||    
T  1877 ttttgtacacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaa 1821  T

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Target: scaffold1293 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 194 - 250
Alignment:
Q  95 ttttgtatacttgtgacattgtggttgaccaatgtcacaaactacgatgtcacccaa 151  Q
    ||||||| |||||||| ||||||||||| ||||||||| ||| || |||||||||||    
T  194 ttttgtacacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaa 250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 30023639 - 30023694
Alignment:
Q  95 ttttgtatacttgtgacattgtggttgaccaatgtcacaaactacgatgtcaccca 150  Q
    ||||||| |||||||||||||||||||  ||||||||| ||| || ||||||||||    
T  30023639 ttttgtacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcaccca 30023694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 11392392 - 11392429
Alignment:
Q  95 ttttgtatacttgtgacattgtggttgaccaatgtcac 132  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  11392392 ttttgtacacttgtgacattgtggttggccaatgtcac 11392429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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