View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10218_low_6 (Length: 416)
Name: NF10218_low_6
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 5568561 - 5568944
Alignment:
| Q |
19 |
gtagattcatggggagttgagatcacccttcttagtgatccttttaggctcctgtgtcgaatagaacaggagtgttttggtgcatgaaaataacatgaga |
118 |
Q |
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| T |
5568561 |
gtagattcatggggagttgagatcacccttcttagcgatccttttaggctcctgtgtcgaatagaacaggagtgttttggtgcatgaaaataacatgaga |
5568660 |
T |
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| Q |
119 |
gatttgttcaagatgatttactttcattcaaatgagttggaaagctcattgttttatcatttgtcaagaggaattctaggtcattcttcataccaagaag |
218 |
Q |
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| T |
5568661 |
gatttgttcaagatgatttactttcattcaaatgagttggaaagcccattgttttatcatttgtcaagaggaattctaggtcattcttcataccaagaag |
5568760 |
T |
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| Q |
219 |
ctcattactttgaatgcagtgtcaagtgtttggttatttttaatgccttttgtgatggtattgaacaaattctcctaaggcagaggcagaagttgttgga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5568761 |
ctcattactttgaatgcagtgtcaagtgtttggttatttttaatgccttttgtgatggtattgaacaaattctcctaaggcagaggcagaagttgttgga |
5568860 |
T |
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| Q |
319 |
gattgtgatttatgcattgcgactcaaagtaacattggtgaagtacattgagaatatgtgctaatgggattgggattacacagg |
402 |
Q |
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| T |
5568861 |
gattgtgatttatacattgcgactcaaagtaacattggtgaagtacattgagaatatgtgctaatgggactgggattacacagg |
5568944 |
T |
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