View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10219_high_12 (Length: 310)
Name: NF10219_high_12
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10219_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 46238454 - 46238733
Alignment:
| Q |
16 |
aaggtgacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctc |
115 |
Q |
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| T |
46238454 |
aaggtgacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctc |
46238553 |
T |
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| Q |
116 |
cagttgctgatgtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggt |
215 |
Q |
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| T |
46238554 |
cagttgctgatgtaagttgtctattatgtgaatccctttactttcctctgtttactcctatgaatatgcatgctatttctttgtttattcttgttgtggt |
46238653 |
T |
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| Q |
216 |
actgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgttatg |
295 |
Q |
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| T |
46238654 |
actgttaacgaggaaaaggaggaaaacgttaaagatgttgtgaattttttagggtttttaattgatgtgaacttgttatg |
46238733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 3456204 - 3455925
Alignment:
| Q |
16 |
aaggtgacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctc |
115 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
3456204 |
aaggtgacgccgaaagaaggagagaagacgaacgaagttgcgaagaagatgcaggaaacaatcgaagggcaatcgacggttatgaaaaacgttggagctc |
3456105 |
T |
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| Q |
116 |
cagttgctgatgtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3456104 |
cagttgctgatgtaagttgtctattatgtgaatccctttactttcttctgtttactcctaagaatatgcatgctatttctttgtttattcttgttgtggt |
3456005 |
T |
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| Q |
216 |
actgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgttatg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3456004 |
actgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggttttaaattgatgtgaacttgttatg |
3455925 |
T |
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