View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10219_high_16 (Length: 255)
Name: NF10219_high_16
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10219_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 11019451 - 11019646
Alignment:
| Q |
1 |
tagtttatcaccaaattcccctttccttcttcgttgaaaattagaaatagatctttagagggaataaaattcgaaaagtgtgtccatgccaat-nnnnnn |
99 |
Q |
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| T |
11019451 |
tagtttatcaccaaattcccctttccttcttcgttgaaaattaaaaatagatctttagagggaataaaattcgaaaagtgtgtccatgctaataaaaaaa |
11019550 |
T |
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| Q |
100 |
nttataaatatgtgtattacattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgtatcatatgccgtatc |
195 |
Q |
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| T |
11019551 |
attataaatatgtgtattatattgagatgtgaatcaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgcatcatatgtcgtatc |
11019646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 11050465 - 11050652
Alignment:
| Q |
1 |
tagtttatcaccaaattcccctttccttcttcgttgaaaattagaaatagatctttagagggaataaaattcgaaaagtgtgtccatgccaatnnnnnnn |
100 |
Q |
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|||||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11050465 |
tagtttatcatcaaatttcactttccttcttcgttgaaaattaaaaatagatctttagagggaataaaattcgaaaagtgtgtccatgccaataaaaaaa |
11050564 |
T |
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| Q |
101 |
-ttataaatatgtgtattacattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgtatcatat |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11050565 |
attataaatatgtgtattacattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgtatcatat |
11050652 |
T |
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