View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10219_high_19 (Length: 242)
Name: NF10219_high_19
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10219_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 31 - 225
Target Start/End: Original strand, 37036192 - 37036389
Alignment:
| Q |
31 |
catgtatatccatcattgcagggtaatattatactacttaccttcatttttaaccattcttgtttgaattcagctgaatca---tcactattggtaactt |
127 |
Q |
| |
|
|||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37036192 |
catgtatatcaacaattgaagggtaatattatactacttaccttcatttttaaccattcttgtttgaattcagctgaatcatcatcactattggtaactt |
37036291 |
T |
|
| Q |
128 |
gagagaaatatctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatag |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37036292 |
gagagaaatatctaaaaggtgctctaacttgtatattatacttcttacagaaaggtacccaaaacttggcaaatttagaagcttccaaaagaccatag |
37036389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 55 - 225
Target Start/End: Original strand, 37045556 - 37045729
Alignment:
| Q |
55 |
aatattatactacttaccttcatttttaaccattcttgtttgaattcagctgaatca---tcactattggtaacttgagagaaatatctaaaaggtgctc |
151 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37045556 |
aatattattttacttaccttcatttttaaccattcttgtttgaattcagctgaatcatcatcactattggtaacttgagagaaatatctaaaaggtgctc |
37045655 |
T |
|
| Q |
152 |
taacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37045656 |
taacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatag |
37045729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 37027703 - 37027778
Alignment:
| Q |
139 |
ctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttcca |
214 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||| ||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
37027703 |
ctaaaaggtgctctaacttgcacattgtatttcttacaaaaaggtacccaaagcttagcaaatttagaggcttcca |
37027778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 37011605 - 37011699
Alignment:
| Q |
131 |
agaaatatctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatag |
225 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| ||||||||||| || || ||||||| | ||||||||| | |||||||| |||| ||||| |
|
|
| T |
37011605 |
agaaatatctaaatggtgctctacattgtacattgtacttcttacaaaatggtacccaaatttcagcaaatttggcagcttccacaagagcatag |
37011699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University