View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10219_high_23 (Length: 229)
Name: NF10219_high_23
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10219_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 33640023 - 33640222
Alignment:
| Q |
11 |
gagagagatgaaagaggaagtggaaactgacagaaccgagagaggtgagattacggaattagggttttgttagtgagaaagtgtaacgaccaaggttttt |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33640023 |
gagagaaatgaaagaggaagtggaaactgacagaaccgagagaggtgagattacggaattagggttttgtttgtgagaaagtgtaacgaccaaggttttt |
33640122 |
T |
|
| Q |
111 |
aaaattgaaatcgtctgataaaatactctacatgacagaaataacatgaaattccattataggacttaaaaaggaaaagaatttaaaatagactaagatc |
210 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33640123 |
aaaattgaaatcctctgataaaatactctacatgacagaaataacatgaaattccattataggacttaaaaaggaaaagaatttaaaatacactaagatc |
33640222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University