View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10219_high_4 (Length: 457)
Name: NF10219_high_4
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10219_high_4 |
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| [»] scaffold0596 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 258 - 432
Target Start/End: Original strand, 7471702 - 7471876
Alignment:
| Q |
258 |
gggggagtattaggaaagccaagtatattccatgattcatgccgtaaatatggtaacaatcgtgtaagaatagtttgattgtaggaatagattgttgagt |
357 |
Q |
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| T |
7471702 |
ggggaagtataaggaaagccaagtatattccatgattcatgccgtaaatatggtaacaatcgtataagaatagtttgattgtaggaatagattgttgagt |
7471801 |
T |
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| Q |
358 |
tatatgagcataaccataaaattagagatatgtatttgtatatacattgcctctgtttttcttaatgaaatcaca |
432 |
Q |
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| T |
7471802 |
tataggagcataaccataaaattagagatatgtatttgtatatacattgcctctatttttcttaatgaaatcaca |
7471876 |
T |
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Target: scaffold0596 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 225
Target Start/End: Original strand, 9730 - 9913
Alignment:
| Q |
42 |
gatttggaaatattgcactcaaaggcaacattgatgtattataacaacctaaaatctcttcgtattgtgtctaatccagtattttatgaaagaacacgtc |
141 |
Q |
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| T |
9730 |
gatttggagatattgcactcaaaggaagaactgttgtattgtgacaacaaagcagctcttcacattgcgtccaatccggtatttcatgaaagaactcgac |
9829 |
T |
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| Q |
142 |
atataaagataaattgtcattttatttatgacaaagtttaagatggttcagttgcaaatgagtatattccttcagcaaaacaag |
225 |
Q |
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| T |
9830 |
atatagagattgattgtcattttattcgtgataaaattcaagatggttcaattgcaactgagtatgttccttcagcagaacaag |
9913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 407
Target Start/End: Original strand, 5599 - 5682
Alignment:
| Q |
324 |
agaatagtttgattgtaggaatagattgttgagttatatgagcataaccataaaattagagatatgtatttgtatatacattgc |
407 |
Q |
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| T |
5599 |
agaatagcttgattgtaggaatatattgctgagttataacagcataatcatcacattagagatatgtatctgtgtatatattgc |
5682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 225
Target Start/End: Original strand, 47752709 - 47752892
Alignment:
| Q |
42 |
gatttggaaatattgcactcaaaggcaacattgatgtattataacaacctaaaatctcttcgtattgtgtctaatccagtattttatgaaagaacacgtc |
141 |
Q |
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| T |
47752709 |
gatttggagatattgcactcaaaggaagaactgttgtattgtgacaacaaagcagctcttcacattgcgtccaatccggtatttcatgaaagaactcgac |
47752808 |
T |
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| Q |
142 |
atataaagataaattgtcattttatttatgacaaagtttaagatggttcagttgcaaatgagtatattccttcagcaaaacaag |
225 |
Q |
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| T |
47752809 |
atatagagattgattgtcattttattcgtgataaaattcaagatggttcaattgcaactgagtatgttccttcagcagaacaag |
47752892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 407
Target Start/End: Original strand, 47753095 - 47753178
Alignment:
| Q |
324 |
agaatagtttgattgtaggaatagattgttgagttatatgagcataaccataaaattagagatatgtatttgtatatacattgc |
407 |
Q |
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| T |
47753095 |
agaatagcttgattgtaggaatatattgctgagttataacagcataatcaacacattagagatatgtatatgtgtatatattgc |
47753178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 19665915 - 19665838
Alignment:
| Q |
324 |
agaatagtttgattgtaggaatagattgttgagttatatgagcataaccataaaattagagatatgtatttgtatata |
401 |
Q |
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| T |
19665915 |
agaatagcttgattataggaatagattgatgagctatagaagcataatcatcaaattagagatatgtatttgtgtata |
19665838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 225
Target Start/End: Complemental strand, 19666246 - 19666118
Alignment:
| Q |
97 |
ctcttcgtattgtgtctaatccagtattttatgaaagaacacgtcatataaagataaattgtcattttatttatgacaaagtttaagatggttcagttgc |
196 |
Q |
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| T |
19666246 |
ctcttcatattgcatctaatccgatatttcatgaaagaactcgacataccgagatagattgtcattttattcgtgacaaaattcaagatggtttatttgc |
19666147 |
T |
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| Q |
197 |
aaatgagtatattccttcagcaaaacaag |
225 |
Q |
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| T |
19666146 |
aactgagtatgttccataagcataacaag |
19666118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 19666062 - 19665988
Alignment:
| Q |
222 |
caagctgggagttcttgatatccactcactaacttg-gggggagtattaggaaagccaagtatattccatgattc |
295 |
Q |
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| T |
19666062 |
caagttgggagttcttaatatccactctctaacttgacggggagtgttaggaaagtcaattatattctatgattc |
19665988 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 392
Target Start/End: Complemental strand, 39037237 - 39037169
Alignment:
| Q |
324 |
agaatagtttgattgtaggaatagattgttgagttatatgagcataaccataaaattagagatatgtat |
392 |
Q |
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| T |
39037237 |
agaatagcttgattgtaggaatatattgctgagttataacagcataatcaacacattagagatatgtat |
39037169 |
T |
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