View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10219_high_5 (Length: 436)
Name: NF10219_high_5
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10219_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Original strand, 23664040 - 23664443
Alignment:
| Q |
17 |
tgaaccatggcgtaatttgcagcaatttcctttcttgaatactttcgaatcaaactcttctggaaataatccatatacttttcaaggagaaagtaatatt |
116 |
Q |
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| T |
23664040 |
tgaaccatggcgtaatttgcagcaatttcctttcttgaatactttcgaatcaaactcttctggaaataatccatatacttttcaaggagaaagtaatatt |
23664139 |
T |
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| Q |
117 |
gaagctgctgcagcatctggatttgttagagatatagcttcaaactctagggctaatcaagagccaccggttaaaatggaagaaaatcgagctttaaatt |
216 |
Q |
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| T |
23664140 |
gaagctgctgcagcatctggatttgttagagatatagcttcaaactctagggctaatcaagagccaccggttaaaatggaagaaaatcgagctttaaatt |
23664239 |
T |
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| Q |
217 |
tttcaagaacatctcttggtgtctctgaacataataaccaacaacaatactattcttggaatgatttatcaggctcttcaagtactcatctcttgtaact |
316 |
Q |
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| T |
23664240 |
tttcaagaacatctcttggtgtctctgaacataataaccaacaacaatactattcttggaatgatttatcaggctcttcaagtactcatatcttgtaact |
23664339 |
T |
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| Q |
317 |
ttcgaccgaatggatcaaagatatgaagttttgaacgattggtcacaacttcaactatgatcactcatattattcaactcagtcatggtagtagaattga |
416 |
Q |
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| T |
23664340 |
ttcgaccgaatggatcaaagatatgaagtttcgaacgattggtcacaacttcaactatgatcactcatattattcaactcagtcatggtagtagaattga |
23664439 |
T |
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| Q |
417 |
tctt |
420 |
Q |
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|||| |
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| T |
23664440 |
tctt |
23664443 |
T |
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