View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10219_low_1 (Length: 601)

Name: NF10219_low_1
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10219_low_1
NF10219_low_1
[»] chr2 (1 HSPs)
chr2 (10-384)||(38584903-38585277)
[»] chr3 (4 HSPs)
chr3 (382-586)||(52731911-52732116)
chr3 (313-374)||(42170265-42170326)
chr3 (150-267)||(13849428-13849545)
chr3 (217-278)||(47298390-47298450)
[»] chr4 (4 HSPs)
chr4 (270-382)||(36626788-36626900)
chr4 (267-374)||(53447388-53447495)
chr4 (270-384)||(53324475-53324589)
chr4 (330-374)||(44110518-44110562)
[»] chr7 (1 HSPs)
chr7 (267-374)||(46430288-46430395)
[»] chr8 (1 HSPs)
chr8 (275-339)||(25980117-25980181)
[»] chr1 (1 HSPs)
chr1 (293-387)||(50365521-50365615)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 384
Target Start/End: Complemental strand, 38585277 - 38584903
Alignment:
Q  10 gcacagagagtacaaattgttcttataggacagaagagatggatagatatagtgccctttagcatgagaaaaacccatgtataactatggaagtggtgaa 109  Q
    |||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38585277 gcacagagagtacacattgtttttataagacaaaagagatggatagatatagtgccctttagcatgagaaaaacccatgtataactatggaagtggtgaa 38585178  T
Q  110 ggggctgttgtgatgcagtataacaaaaatataaggtataaaaggaaaccatggagagagacatgggtaaaaatggaaaatcaaggataaaaggtaattc 209  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38585177 ggtgctgttgtgatgcagtataacaaaaatataaggtataaaaggaaaccatggagagagacatgggtaaaaatggaaaatcaaggataaaaggtacttc 38585078  T
Q  210 ttcccattttcttcgcatatgagcgaagagacctaaaagtggtaggccccaccaattttggtctctctcccctttttcttctatctcccaaacaggagaa 309  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38585077 ttcccattttgttcgcatctgagcgaagagacctaaaagtggtaggccccaccaattttggtctctctcccctttttcttctgtctcccaaacaggagaa 38584978  T
Q  310 gtgggacatctccttcctctttctctcttcagtatttctctcgcccctatttcttgccaaccaaatacagtgtta 384  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  38584977 gtgggacatctccttcctctttctcttttcagtatttctctcgcccctatttcttgccaaccaaacacagtgtta 38584903  T

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Target: chr3 (Bit Score: 182; Significance: 4e-98; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 382 - 586
Target Start/End: Complemental strand, 52732116 - 52731911
Alignment:
Q  382 ttagtgattgtgctaatga-gcaagaaaacatatgatctaaggttgacactcgacccaagcaaagatatgtcgttgaaatccctttaagagaaagccttc 480  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52732116 ttagtgattgtgctaatgaagcaagaaaacatatgacctaaggttgacactcgacccaagcaaagatatgtcgttgaaacccctttaagagaaagccttc 52732017  T
Q  481 gtaaagcccgctagcgcacttgacttgaagtttcgtgcatcctcttattgcgagaggggtaacataatagtcttagtcagaccgtatagtcttttttagt 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  52732016 gtaaagcccgctagcgcacttgacttgaagtttcgtgcatcctcttattgcgagaggggtaacataatagttttagtcagatcgtatagtcttttttagt 52731917  T
Q  581 tgatgc 586  Q
    ||||||    
T  52731916 tgatgc 52731911  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 42170265 - 42170326
Alignment:
Q  313 ggacatctccttcctctttctctcttcagtatttctctcgcccctatttcttgccaaccaaa 374  Q
    ||||||||||| ||| |||||||||||| || |||||||||| ||||||||||| |||||||    
T  42170265 ggacatctcctccctatttctctcttcaatacttctctcgcctctatttcttgctaaccaaa 42170326  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 150 - 267
Target Start/End: Original strand, 13849428 - 13849545
Alignment:
Q  150 aaaggaaaccatggagagagacatgggtaaaaatggaaaatcaaggataaaaggtaattcttcccattttcttcgcatatgagcgaagagacctaaaagt 249  Q
    |||||||||||  ||||| |||  ||||||||||||||||  ||||| ||||     |||||| |  |||||||||||||||| ||||||| ||||||||    
T  13849428 aaaggaaaccaccgagagtgacgagggtaaaaatggaaaagtaaggaaaaaaacactttcttcactctttcttcgcatatgagagaagagagctaaaagt 13849527  T
Q  250 ggtaggccccaccaattt 267  Q
    ||| || |||||| ||||    
T  13849528 ggtgggacccacctattt 13849545  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 47298450 - 47298390
Alignment:
Q  217 tttcttcgcatatgagcgaagagacctaaaagtggtaggccccaccaattttggtctctctc 278  Q
    |||||||||||||||| ||||||| ||||||||||| || |||| | ||||| |||||||||    
T  47298450 tttcttcgcatatgagagaagagagctaaaagtggtgggacccatctatttt-gtctctctc 47298390  T

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Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 270 - 382
Target Start/End: Original strand, 36626788 - 36626900
Alignment:
Q  270 gtctctctcccctttttcttctatctcccaaacaggagaagtgggacatctccttcctctttctctcttcagtatttctctcgcccctatttcttgccaa 369  Q
    |||||||||| || ||||||   |||||||||||||||||||||| |||||||||||| |||||||||||| |  |||||||||| ||||||||||||||    
T  36626788 gtctctctcctctatttctttggtctcccaaacaggagaagtggggcatctccttcctatttctctcttcaatgcttctctcgcctctatttcttgccaa 36626887  T
Q  370 ccaaatacagtgt 382  Q
    ||||| |||||||    
T  36626888 ccaaacacagtgt 36626900  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 267 - 374
Target Start/End: Complemental strand, 53447495 - 53447388
Alignment:
Q  267 ttggtctctctcccctttttcttctatctcccaaacaggagaagtgggacatctccttcctctttctctcttcagtatttctctcgcccctatttcttgc 366  Q
    ||||||||||| |||| |||||||  ||||||||||||||||| |||| |||||||| |||||||||||||| | || ||||||||||| ||||||||||    
T  53447495 ttggtctctcttccctatttcttcagtctcccaaacaggagaaatggggcatctcctccctctttctctctttaatacttctctcgcccttatttcttgc 53447396  T
Q  367 caaccaaa 374  Q
    ||||||||    
T  53447395 caaccaaa 53447388  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 270 - 384
Target Start/End: Original strand, 53324475 - 53324589
Alignment:
Q  270 gtctctctcccctttttcttctatctcccaaacaggagaagtgggacatctccttcctctttctctcttcagtatttctctcgcccctatttcttgccaa 369  Q
    |||||||||| || ||||||   |||||||||||||||||||||  |||||||||||| ||||| |||||| |  ||||||||||  |||||||||||||    
T  53324475 gtctctctcctctatttctttggtctcccaaacaggagaagtggagcatctccttcctatttctatcttcaatgcttctctcgcctttatttcttgccaa 53324574  T
Q  370 ccaaatacagtgtta 384  Q
    ||||| |||||||||    
T  53324575 ccaaacacagtgtta 53324589  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 44110518 - 44110562
Alignment:
Q  330 ttctctcttcagtatttctctcgcccctatttcttgccaaccaaa 374  Q
    ||||||||||||| | ||||||| ||||||||||||| |||||||    
T  44110518 ttctctcttcagtttctctctcgtccctatttcttgctaaccaaa 44110562  T

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Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 267 - 374
Target Start/End: Original strand, 46430288 - 46430395
Alignment:
Q  267 ttggtctctctcccctttttcttctatctcccaaacaggagaagtgggacatctccttcctctttctctcttcagtatttctctcgcccctatttcttgc 366  Q
    |||||||||||||||| ||||||||  ||||||| ||||||||||| |||||||| ||||| |||||||||||| || ||||||| || ||| || ||||    
T  46430288 ttggtctctctcccctatttcttctgcctcccaatcaggagaagtgtgacatctctttcctatttctctcttcaatacttctctctcctctaattgttgc 46430387  T
Q  367 caaccaaa 374  Q
    ||||||||    
T  46430388 caaccaaa 46430395  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 339
Target Start/End: Complemental strand, 25980181 - 25980117
Alignment:
Q  275 tctcccctttttcttctatctcccaaacaggagaagtgggacatctccttcctctttctctcttc 339  Q
    |||||||| |||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||    
T  25980181 tctcccctatttcttctgtctcccaatcaggagaagtgtggcatctccttcctctttctctcttc 25980117  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 387
Target Start/End: Complemental strand, 50365615 - 50365521
Alignment:
Q  293 tctcccaaacaggagaagtgggacatctccttcctctttctctcttcagtatttctctcgcccctatttcttgccaaccaaatacagtgttagtg 387  Q
    ||||||||||||||||| || ||||| ||  |||| |||||||||||| || |||||||  |  |||||||  |||| |||| ||||||||||||    
T  50365615 tctcccaaacaggagaaatgtgacatttctctcctatttctctcttcaatacttctctcttctttatttctcaccaatcaaacacagtgttagtg 50365521  T

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