View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10219_low_10 (Length: 368)
Name: NF10219_low_10
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10219_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 121 - 267
Target Start/End: Complemental strand, 1898013 - 1897869
Alignment:
| Q |
121 |
gaattatacattctagtaaatactatgtagcactgatacttcatattgaagacgtggtgttcagtgtccaacatgtatcgatgtctggcacgtgttggtg |
220 |
Q |
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| T |
1898013 |
gaattatacattctagtaaatactatgtagcactgatacttcatattgaaaacgtg---ttcagtgtccaacatgtatcgatgtctggcacgtgctggtg |
1897917 |
T |
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| Q |
221 |
tcggacatagacatgcatgttaaattcaa-cctttccattttctcaaa |
267 |
Q |
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| T |
1897916 |
tcggacatagacatgcatgttaaattcaatcatttccattttctcaaa |
1897869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 259 - 351
Target Start/End: Complemental strand, 1897696 - 1897604
Alignment:
| Q |
259 |
tttctcaaatgactattcgtgtctacgtgctagtgtcagtattatgtctggtgttcgtgactgtgtcaatcatttccattttctctcattttg |
351 |
Q |
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| T |
1897696 |
tttctcaaatgactattcgtgtctacgtgctagtgtcagtattatgtctggtgttcgtgactgtgtcaatcatttccattttctctcattttg |
1897604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 1898133 - 1898043
Alignment:
| Q |
1 |
actgaaacttttcagtactaaaattttgatgatcccattaaataacaagtaatgaagaaatatttacttgtaaaggatttggattctatgg |
91 |
Q |
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| T |
1898133 |
actgaaacttttcagtactaaaattttgatgatcccattaaataacaagaaatgaagaaatatttacttgtaaaggatttggattctatgg |
1898043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 328
Target Start/End: Complemental strand, 1903344 - 1903146
Alignment:
| Q |
128 |
acattctagtaaatactatgtagcactgatacttcatattgaagacgtggtgttcagtgtccaacatgtatcgatgtctggcacgtgttggtgtcggaca |
227 |
Q |
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| T |
1903344 |
acattctagtaaatactatgcagcaccgatacttcacattgaaggcgtg---ttcagtgttcaacaggcattagtgtttggcacgtgctggtgtcagaca |
1903248 |
T |
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| Q |
228 |
tagacatgcatgttaaattcaaccttt-ccattttctcaaatgactattcgtgtctacgtgctagtgtcagtattatgtctggtgttcgtgactgtgtca |
326 |
Q |
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| T |
1903247 |
tagacatgcatgttacatccaatcttttccatttcatcaaattattattgatgtctatgtcctagtgtcagtgttatatatggtgttcgtgactgtgtca |
1903148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 328
Target Start/End: Complemental strand, 1907577 - 1907379
Alignment:
| Q |
128 |
acattctagtaaatactatgtagcactgatacttcatattgaagacgtggtgttcagtgtccaacatgtatcgatgtctggcacgtgttggtgtcggaca |
227 |
Q |
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| T |
1907577 |
acattctagtaaatactatgcagcaccgatacttcacattgaaggcgtg---ttcagtgttcaacaggcattagtgtttggcacgtgctggtgtcagaca |
1907481 |
T |
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| Q |
228 |
tagacatgcatgttaaattcaaccttt-ccattttctcaaatgactattcgtgtctacgtgctagtgtcagtattatgtctggtgttcgtgactgtgtca |
326 |
Q |
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| T |
1907480 |
tagacatgcatgttacatccaatcttttccatttcatcaaattattattgatgtctatgtcctagtgtcagtgttatatatggtgttcgtgactgtgtca |
1907381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1903433 - 1903369
Alignment:
| Q |
1 |
actgaaacttttcagtactaaaattttgatgatcccattaaataacaagtaatgaagaaatattt |
65 |
Q |
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| T |
1903433 |
actgaaacttttcagtactaaaattttgatgatctcattaaataacaagaaatgaaaaaatattt |
1903369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1907666 - 1907602
Alignment:
| Q |
1 |
actgaaacttttcagtactaaaattttgatgatcccattaaataacaagtaatgaagaaatattt |
65 |
Q |
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| T |
1907666 |
actgaaacttttcagtactaaaattttgatgatctcattaaataacaagaaatgaaaaaatattt |
1907602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 1880652 - 1880601
Alignment:
| Q |
39 |
taaataacaagtaatgaagaaatatttacttgtaaaggatttggattctatg |
90 |
Q |
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| T |
1880652 |
taaataaaaagaaatgaagaaatatttacttgtaaaggatattgattctatg |
1880601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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