View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10219_low_13 (Length: 319)
Name: NF10219_low_13
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10219_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 135 - 303
Target Start/End: Original strand, 8510038 - 8510206
Alignment:
| Q |
135 |
ccccctccctttgctcctaacacctctaataatgtaagatttgaccaaaccccatcattagatatgggtttaatctatgtgttttggagcttatatcttg |
234 |
Q |
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| T |
8510038 |
ccccctccctttgctcctaacacctctaataatgtaaggtttgaccaaaccccatcattagatatgggtttaatctatgtgttttggagcttatatcttg |
8510137 |
T |
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| Q |
235 |
ctgtcaaaatgtttaaatttgattaatgcctaaaacaatttatttggaattaagcattaacctttcaat |
303 |
Q |
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| T |
8510138 |
ctgtcaaaatgtttaaatttgattaatgcctaaaacaatttatttggaattaagcattaccctttcaat |
8510206 |
T |
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Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 8509904 - 8509984
Alignment:
| Q |
1 |
gcaactatcaaatttgtaaaataactatgaaatataccccacaccctattccaccctgcaaaatccctttgcatatcatga |
81 |
Q |
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| T |
8509904 |
gcaactatcaaatttgtaaaataactatgaaatataccccacaccctattccaccctgcaaaatccctttgcatatcatga |
8509984 |
T |
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