View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10219_low_2 (Length: 561)
Name: NF10219_low_2
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10219_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 299 - 551
Target Start/End: Complemental strand, 8393231 - 8392973
Alignment:
| Q |
299 |
agatatgaacctcatacctttgactatatattatgcattgtacatatcagttaaattaaactcacaaaaacaccca-ttttatttttcatacagatattc |
397 |
Q |
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| T |
8393231 |
agatttgaatctcatacctttaactatatattatgcattgtacataccagctaaattaaactcacatagacacccccttttatttttcataccaatattc |
8393132 |
T |
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| Q |
398 |
aacatctcattttccttttaccactctttcttattatcatatattcaccatatgtattattttactctcttgatttctttttctctctagtgg-----ta |
492 |
Q |
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| T |
8393131 |
aacatctcattttccttttaccactctttcttattatcatatattcaccatatgtattattttactctcttgatttctttttctctctagtggtaaagta |
8393032 |
T |
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| Q |
493 |
aaatggttttgggtgttgaagaattattttccttcttttaatttgtgtatgtatctgtg |
551 |
Q |
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| T |
8393031 |
aaatggttttgggtgttgaagaattattttccttcttttaatttgtgtatgtatatgtg |
8392973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 8393501 - 8393286
Alignment:
| Q |
18 |
catctaacatctccagtttgttttctt-gatatattgctgaatgaatgaatcaatgaggtttttggattgttattgttattgttatatgttaggttgtga |
116 |
Q |
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| T |
8393501 |
catctaacatctccagtttgttttctttgatatattgcagaatcaatcaatgaatcaggtttttggattgttattgttat------attttaggttgtga |
8393408 |
T |
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| Q |
117 |
ataaattaagttttgtttattgagtgtggagaagaaaagagatggtgtggtatggtatggtatgggaaatgggaatcattgggtttgttatttcctcttg |
216 |
Q |
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| T |
8393407 |
ataaattaagttttgtttattgagtgtggagaagaaaagagagggtgtggtatggtatggtatgggaaatgggaatcattgggtttgttattttctcttg |
8393308 |
T |
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| Q |
217 |
ttttctagtaatttcggtgttc |
238 |
Q |
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| T |
8393307 |
ttttctagtaattttggtgttc |
8393286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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