View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10219_low_21 (Length: 255)
Name: NF10219_low_21
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10219_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 11019345 - 11019131
Alignment:
| Q |
24 |
atcctctctttaatatcctttccatggtccgattccatcaattccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttca |
123 |
Q |
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| T |
11019345 |
atcctctctttaatatcctttccacggtccgattccatcaactccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttca |
11019246 |
T |
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| Q |
124 |
ctttcaaagccaccttcatttcatcgattaaaaccaatctatttagcgtttgttctgcgaacaaaggccatgcaatcattggcaccccttcataaatagc |
223 |
Q |
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| T |
11019245 |
ctttcaaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagc |
11019146 |
T |
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| Q |
224 |
ttccaacacggagtt |
238 |
Q |
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| T |
11019145 |
ttccaacacggagtt |
11019131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 11050474 - 11050247
Alignment:
| Q |
3 |
tgataaactattccaagaagcatcctctctttaatatcctttccatggtccgattccatcaattccttaactctctcacccaactctgtgccactcacaa |
102 |
Q |
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| T |
11050474 |
tgataaactattccaagaagcatcctctctttaatatc-tttcca-------attccatcaactccttaactctctcacccaattctgcgccactcacaa |
11050383 |
T |
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| Q |
103 |
acctattttctgattggttcactttcaaagccaccttcatttcatcgattaaaaccaatctatttagcgtttgttctgcgaacaaaggccatgcaatcat |
202 |
Q |
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| T |
11050382 |
acctattttctgattggttcacttttaaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcaaacaaaggccatgcaatcat |
11050283 |
T |
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| Q |
203 |
tggcaccccttcataaatagcttccaacacggagtt |
238 |
Q |
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| T |
11050282 |
tggcaccccttcataaatagcttccaacacggagtt |
11050247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 11002934 - 11002750
Alignment:
| Q |
54 |
gattccatcaattccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttcactttcaaagccaccttcatttcatcgatta |
153 |
Q |
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||||||||||| |||||||||||||| |||||||| | ||||||||||||| |||| ||| || | || |||||||||||||||||| || | | |
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| T |
11002934 |
gattccatcaactccttaactctctcccccaactcatttccactcacaaaccctttttttgacccatttagttccaaagccaccttcatttcctcaacca |
11002835 |
T |
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| Q |
154 |
aaaccaatctatttagcgtttgttctgcgaacaaaggccatgcaatcattggcaccccttcataaatagcttccaacacggagtt |
238 |
Q |
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| T |
11002834 |
aaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttccaacactgagtt |
11002750 |
T |
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