View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10219_low_25 (Length: 251)
Name: NF10219_low_25
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10219_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 76 - 237
Target Start/End: Original strand, 9009509 - 9009671
Alignment:
| Q |
76 |
aacatcaaattccgtcatatttttaggatattccaatttgagctagttt-attataaggaaaatgcttaacatagcgataagtagtatcacgaggagatc |
174 |
Q |
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| T |
9009509 |
aacatcaaattccgtcatatttttaagatattccaatttgagctagttttattataaggaaaatgcttaacatagcgataagtagtatcacgaggagatc |
9009608 |
T |
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| Q |
175 |
acgatagaaatagcagcgttgcacacttgaaagtttgaccataataacacccacagcctcctt |
237 |
Q |
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| T |
9009609 |
acgatagaaatagcagcgttgcacacttgaaagtttgaccataataacacccacaacctcctt |
9009671 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 9009451 - 9009485
Alignment:
| Q |
18 |
ggcttgacttgtcttttcctgcttacaccgttcta |
52 |
Q |
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| T |
9009451 |
ggcttgacttgtcttttcctgcttacacctttcta |
9009485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 53311161 - 53311207
Alignment:
| Q |
194 |
tgcacacttgaaagtttgaccataataacacccacagcctccttctt |
240 |
Q |
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| T |
53311161 |
tgcacacttgaaagtttgaccttaataacacccattacctccttctt |
53311207 |
T |
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