View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10219_low_3 (Length: 480)
Name: NF10219_low_3
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10219_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 9 - 470
Target Start/End: Original strand, 299018 - 299478
Alignment:
| Q |
9 |
atcttcaagtggagaacatcagaatctaacacacaaaaccaatcctaaacatggtgatcttgatattcccaatgacacagtcatcaggcaagcccaagtg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
299018 |
atcttcaagtggagaacatcagaatctaacacacaaaaccaatcctaaacatggtgatcttgatattcccaatgacacagtcgtcaggcaagcccaagtg |
299117 |
T |
|
| Q |
109 |
gaatctaagaaaggaagaaagaaacactactccattggcgctcataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtcagaggta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
299118 |
gaatctaagaaaggaagaaagaaacactactccattggcgctcataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtcagaggta |
299217 |
T |
|
| Q |
209 |
agattatgcctccttatatgaagttttgtttggaatatttttatttgttgaagactaatgcctgggttaatttaggtacatgtacaaatgttttagatgg |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
299218 |
agattatgcctcctcatatgaagttttgtttggaatatttttatctgctgaagactaatgcctgggttaatttaggtacatgtacaaatgttttagatgg |
299317 |
T |
|
| Q |
309 |
attactaactggtttcccctttcctttcaacagcttcagatttttctgtggggcaatttcagtttttgnnnnnnntcacttttggttcatgggcacttga |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
299318 |
attactaactggtttcccctttcctttcaacagcttcagatttttctgtggcgcaatttcagtttttg-aaaaaatcacttttggttcatgggcacttga |
299416 |
T |
|
| Q |
409 |
attatcagtatgttgtttatttagttttgtataatttagcttctaacacaatgctgcctttg |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
299417 |
attatcagtatgttgtttatttagttttgtataatttagcttctaacacaatgctgtctttg |
299478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 301176 - 301514
Alignment:
| Q |
9 |
atcttcaagtggagaacatcagaatctaacacacaaaaccaatcctaaacatggtgatcttgatattcccaatg--acacagtcatcaggcaagcccaag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||| |
|
|
| T |
301176 |
atcttcaagtggagaacatcagaatctaaagcacaaaaccaatgctaaacatggtgatcttgatattcccaatgatacaaagtcatcaagcatgcccaag |
301275 |
T |
|
| Q |
107 |
tggaatctaagaaaggaag---aaagaaacactactccattggcgctcataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtcag |
203 |
Q |
| |
|
|||||| || |||| |||| ||| |||||||||||||||||| ||||||||||||| |||||||||||| | || ||||||||| || |||||||||| |
|
|
| T |
301276 |
tggaatttaggaaaagaagagaaaaaaaacactactccattggcactcataattgatggaaccagtttggtctataccttggagaaagaactggagtcag |
301375 |
T |
|
| Q |
204 |
aggtaagattatgcctccttatatg-aagttttgtttggaatatttttat-ttgttgaagactaatgcctgggttaatttaggtacatgtacaaatgttt |
301 |
Q |
| |
|
||| || ||||| | || ||||||| || ||||||||| ||||||||||| || | ||| |||||||| ||||||||||| ||| ||| | ||| ||||| |
|
|
| T |
301376 |
aggcaatattatccttctttatatgaaatttttgtttgaaatatttttatattttggaaaactaatgcttgggttaattt-ggtgcatattcaactgttt |
301474 |
T |
|
| Q |
302 |
tagatggattactaactggtttcccctttcctttcaacag |
341 |
Q |
| |
|
||||| || |||||||| |||| || | |||||||||||| |
|
|
| T |
301475 |
tagattgaatactaactagtttaccatctcctttcaacag |
301514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 27465193 - 27465123
Alignment:
| Q |
139 |
tccattggcgctcataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtcagaggtaa |
209 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
27465193 |
tccattggcactcataattgatgggaatagtttggtttatattttggagaaggaattggagtcagaggtaa |
27465123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University