View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10219_low_35 (Length: 226)
Name: NF10219_low_35
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10219_low_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 37880144 - 37879926
Alignment:
| Q |
1 |
tatataaaggatttgcatgcatgtgattattaatcttaattcttaaaaatccaaactcaagtaaaggccatagctattgtttcattgttgtgctattgct |
100 |
Q |
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| T |
37880144 |
tatataaaggatttgcatgcatgtgattattaatcttaa-------aaatccaaactcaagtaaaggccatagctattgtttcattgttgtgctattgct |
37880052 |
T |
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| Q |
101 |
tctgaatcttttcttagggttgaagccgaagccgaagctgaacaaacaaaacaaactctcctataaactaggcatggcgtcgtcgaaggttgttgttctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37880051 |
tctgaatcttttcttagggttgaagccgaagccgaagctgaacaaacaaaacaaactctcctataaactaggcatggcgtcatcgaaggttgttgttctc |
37879952 |
T |
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| Q |
201 |
tcaacaaatccggatctgccacgcac |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37879951 |
tcaacaaatccggatctgccacgcac |
37879926 |
T |
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