View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10219_low_8 (Length: 379)

Name: NF10219_low_8
Description: NF10219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10219_low_8
NF10219_low_8
[»] chr3 (2 HSPs)
chr3 (1-362)||(25601486-25601847)
chr3 (17-297)||(25596746-25597026)
[»] chr4 (14 HSPs)
chr4 (32-165)||(36643618-36643751)
chr4 (32-178)||(55967007-55967153)
chr4 (35-147)||(36613342-36613454)
chr4 (35-179)||(38863134-38863278)
chr4 (53-147)||(35974003-35974097)
chr4 (18-102)||(18364242-18364326)
chr4 (55-167)||(35968285-35968397)
chr4 (18-102)||(36598599-36598683)
chr4 (32-179)||(18083021-18083168)
chr4 (32-179)||(36617513-36617660)
chr4 (35-105)||(3978136-3978206)
chr4 (53-179)||(18359158-18359284)
chr4 (53-179)||(36603644-36603770)
chr4 (108-178)||(36636999-36637069)
[»] chr1 (2 HSPs)
chr1 (19-176)||(42602847-42603004)
chr1 (45-179)||(28928442-28928576)
[»] chr6 (4 HSPs)
chr6 (53-178)||(33844280-33844405)
chr6 (53-178)||(33840288-33840413)
chr6 (73-179)||(7140746-7140852)
chr6 (73-179)||(8680360-8680466)
[»] chr7 (4 HSPs)
chr7 (53-117)||(32413648-32413712)
chr7 (40-105)||(6844163-6844228)
chr7 (74-159)||(14677153-14677238)
chr7 (53-105)||(44501441-44501493)
[»] chr8 (2 HSPs)
chr8 (37-146)||(35335844-35335953)
chr8 (45-117)||(27701888-27701960)
[»] chr5 (4 HSPs)
chr5 (35-146)||(19658322-19658433)
chr5 (35-146)||(19675161-19675272)
chr5 (73-159)||(17667110-17667196)
chr5 (60-117)||(25064275-25064332)
[»] chr2 (2 HSPs)
chr2 (62-108)||(43864058-43864104)
chr2 (45-106)||(43875208-43875269)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 25601847 - 25601486
Alignment:
Q  1 tgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601847 tgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtt 25601748  T
Q  101 tgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctcagagtgtattg 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601747 tgaacagcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctcagagtgtattg 25601648  T
Q  201 ctttattcaaaaaatttataaaatcagacatgtcccttgtttcgactttgttaagcactgaatcagaacaaaaacaatgtaattatattgtgcaatagga 300  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25601647 ctttattcaaattttttataaaatcagacatgtcccttgtttcgactttgttaagcactgaatcagaacaaaaacaatgtaattatattgtgcaataaga 25601548  T
Q  301 ttgattatagagcaagattccaatcctaattaaaatctagaatgtatttttaagtatgaagt 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601547 ttgattatagagcaagattccaatcctaattaaaatctagaatgtatttttaagtatgaagt 25601486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 25597026 - 25596746
Alignment:
Q  17 atagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttgg 116  Q
    |||||||| ||||||  | ||||||||||||||||||||||| |||||||||||| ||||||||| || |||||||||||||||||||||||||  ||||    
T  25597026 atagtggggaattcaaggcaatgcaatataagggtgggaatatgtttccaaagattcttccatctcgtagacaaaatgcaagtttgaacggcatacttgg 25596927  T
Q  117 tattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctcagagtgtattgctttattcaaaaaatt 216  Q
    ||||  ||||||||||||| ||||| ||||||  |||||||||||| |||||||||||||||| ||| || ||| ||||||||||||| | ||     ||    
T  25596926 tattcaaaaatgacaaaatgtgaagaagaacattgtcgggtaaatcgctcaatctgtcttcattctcattttcacagtgtattgctttctccattttttt 25596827  T
Q  217 tataaaatcagacatgtcccttgtttcgactttgttaagcactgaatcagaacaaaaacaatgtaattatattgtgcaata 297  Q
     || ||||||| || ||| |||||||| ||||||||| ||| |||| | ||  |||||||||  ||||||||| |||||||    
T  25596826 aatgaaatcaggcacgtcacttgtttccactttgttaggcattgaaactgataaaaaacaattgaattatattatgcaata 25596746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 165
Target Start/End: Original strand, 36643618 - 36643751
Alignment:
Q  32 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 131  Q
    |||||||| ||||||||||| |||||||||  |||||||| ||||||||||||||||||||  || |||||||| ||||||||||  |   ||||||| |    
T  36643618 gaggaatgtaatataagggtaggaatacgtgcccaaagatgcttccatcttgtggacaaaacacaggtttgaacagcatgtttggagtccaaaaatgata 36643717  T
Q  132 aaatatgaaggagaacacagtcgggtaaatcact 165  Q
    |||| ||||||| |||||| |||||||| |||||    
T  36643718 aaatgtgaaggataacacactcgggtaagtcact 36643751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 55967007 - 55967153
Alignment:
Q  32 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 131  Q
    ||||||||||| |||||||  |||| | ||||||| |||||  ||||||||||||||||||  ||||||  || | |||| ||||| ||  ||||||| |    
T  55967007 gaggaatgcaaaataagggctggaacatgtttccagagatatctccatcttgtggacaaaacacaagttctaatgacatgcttggtcttcaaaaatgata 55967106  T
Q  132 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttca 178  Q
    |||| ||||||||||||| ||||||||| |||||  |||||||||||    
T  55967107 aaatgtgaaggagaacactgtcgggtaagtcactttatctgtcttca 55967153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 36613342 - 36613454
Alignment:
Q  35 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaa 134  Q
    ||||||||  |||| || |||||| ||||||||||||||||||| |||||||||||||  ||||||||| |||||| | |||  |   ||||||||||||    
T  36613342 gaatgcaaattaagagttggaataagtttccaaagatacttccaccttgtggacaaaacacaagtttgatcggcatatgtggcgtccaaaaatgacaaaa 36613441  T
Q  135 tatgaaggagaac 147  Q
    | |||||||||||    
T  36613442 tgtgaaggagaac 36613454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 179
Target Start/End: Original strand, 38863134 - 38863278
Alignment:
Q  35 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaa 134  Q
    |||||||||||||| |  |||||||||||| | ||||  ||||||||  |||||||||  |||||| ||| |||||||||||||||  |  |||||||||    
T  38863134 gaatgcaatataagagatggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaatggcatgtttggtattcaacgatgacaaaa 38863233  T
Q  135 tatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 179  Q
    | | |||||||| || ||||||||| ||||||   ||||||||||    
T  38863234 tgtaaaggagaataccgtcgggtaagtcactcggcctgtcttcat 38863278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 35974097 - 35974003
Alignment:
Q  53 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaac 147  Q
    |||||||||||||| ||||   ||||||||||||||||||| ||| |||||||||| ||||| ||||   | ||||||||||| |||||||||||    
T  35974097 ggaatacgtttccagagatgtctccatcttgtggacaaaatacaactttgaacggcctgttttgtatcgaacaatgacaaaatgtgaaggagaac 35974003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 18364326 - 18364242
Alignment:
Q  18 tagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttg 102  Q
    |||||| ||| || ||||||||||| ||||| || ||||| |||||||||||||  ||||||||||| ||||||||| |||||||    
T  18364326 tagtggaaaagtctgaggaatgcaacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtttg 18364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 167
Target Start/End: Complemental strand, 35968397 - 35968285
Alignment:
Q  55 aatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcg 154  Q
    |||||||||||| ||||  | ||||||| ||||||||| ||||||||||||| | ||||| ||||   | ||||||||||| ||||||||||| | ||||    
T  35968397 aatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaataatgacaaaatgtgaaggagaactccgtcg 35968298  T
Q  155 ggtaaatcactca 167  Q
    | ||| |||||||    
T  35968297 gctaactcactca 35968285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 36598599 - 36598683
Alignment:
Q  18 tagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttg 102  Q
    |||||| ||| || ||||||||||| ||||| || ||||| |||||||||||||  ||||||||||| ||||||||| |||||||    
T  36598599 tagtggaaaagtctgaggaatgcaacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtttg 36598683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 179
Target Start/End: Complemental strand, 18083168 - 18083021
Alignment:
Q  32 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 131  Q
    ||||||| ||||| ||| || |||||| ||||||| | ||  ||||||||| | ||||||| ||||||| ||||  ||| |||||| ||  |||||||||    
T  18083168 gaggaatccaatacaagagtaggaatatgtttccatatatctttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgaca 18083069  T
Q  132 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 179  Q
    |||||  ||||| ||||| ||  ||||| |||||||| || |||||||    
T  18083068 aaatacaaaggataacactgttaggtaagtcactcaacctatcttcat 18083021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 36617513 - 36617660
Alignment:
Q  32 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 131  Q
    ||||||| ||||| ||| || |||||| ||||||| | ||  ||||||||| | ||||||| ||||||| ||||  ||| |||||| ||  |||||||||    
T  36617513 gaggaatccaatacaagagtaggaatatgtttccatatatctttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgaca 36617612  T
Q  132 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 179  Q
    |||||  ||||| ||||| ||  ||||| |||||||| || |||||||    
T  36617613 aaatacaaaggataacactgttaggtaagtcactcaacctatcttcat 36617660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 3978206 - 3978136
Alignment:
Q  35 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 105  Q
    ||||||||| |||| || |||| |||||||||||||| |||  |||||||||| |||| ||||||||||||    
T  3978206 gaatgcaatgtaagagtaggaagacgtttccaaagatccttatatcttgtggataaaacgcaagtttgaac 3978136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 18359284 - 18359158
Alignment:
Q  53 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 152  Q
    |||||| |||||||||||| |||||| ||| |||||||||||| |||| ||||   |||||||| ||   | | ||||||||| ||||| |||||||| |    
T  18359284 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaactcgatgtttggaatccaacattgacaaaatgtgaagaagaacacaat 18359185  T
Q  153 cgggtaaatcactcaatctgtcttcat 179  Q
    | || || |||||||  ||||||||||    
T  18359184 caggcaagtcactcagcctgtcttcat 18359158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 36603644 - 36603770
Alignment:
Q  53 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 152  Q
    |||||| |||||||||||| |||||| ||| |||||||||||| |||| ||||   |||||||| ||   | | ||||||||| ||||| |||||||| |    
T  36603644 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaactcgatgtttggaatccaacattgacaaaatgtgaagaagaacacaat 36603743  T
Q  153 cgggtaaatcactcaatctgtcttcat 179  Q
    | || || |||||||  ||||||||||    
T  36603744 caggcaagtcactcagcctgtcttcat 36603770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 36636999 - 36637069
Alignment:
Q  108 catgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttca 178  Q
    |||||||||||||  ||||||||||||| |||||||  | || ||||||||| |||||||  |||||||||    
T  36636999 catgtttggtattcaaaaatgacaaaatgtgaaggattataccgtcgggtaagtcactcagcctgtcttca 36637069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 42602847 - 42603004
Alignment:
Q  19 agtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggta 118  Q
    ||||||||| |  ||||||| ||||||||| || |||||||||||||| | |  |||||||||| ||||||| ||||||||||||||||  |||||||      
T  42602847 agtgggaaagtttgaggaatccaatataagagtaggaatacgtttccacataagcttccatcttttggacaagatgcaagtttgaacggtgtgtttggag 42602946  T
Q  119 ttacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtctt 176  Q
    |||  |||||||||||| ||||||| || |||||| ||||| |||||||  |||||||    
T  42602947 ttaagaaatgacaaaatgtgaaggataagacagtcaggtaagtcactcagcctgtctt 42603004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 179
Target Start/End: Original strand, 28928442 - 28928576
Alignment:
Q  45 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggag 144  Q
    |||||||||||| ||| ||||| |||| ||||||||  ||||| |  |||||||||||||| || | |||||  ||  |||| || || || ||||| ||    
T  28928442 taagggtgggaagacgcttccagagattcttccatcgagtggagagtatgcaagtttgaacagcttctttggcttttaaaaaagataatatgtgaagtag 28928541  T
Q  145 aacacagtcgggtaaatcactcaatctgtcttcat 179  Q
    ||||||||| || |||||||| ||  |||||||||    
T  28928542 aacacagtccgggaaatcactgaacatgtcttcat 28928576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 33844280 - 33844405
Alignment:
Q  53 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 152  Q
    |||||||||||||| ||||  |||||||| |||||||||||||||||||||||||| | || ||| ||  ||||||||||||| | ||  ||||  ||||    
T  33844280 ggaatacgtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatgtaaataagaatgcagt 33844379  T
Q  153 cgggtaaatcactcaatctgtcttca 178  Q
    ||||||| ||||| | ||| ||||||    
T  33844380 cgggtaagtcacttagtctatcttca 33844405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 33840288 - 33840413
Alignment:
Q  53 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 152  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||| |||| || | || | |  |  ||||||||||||| | ||  ||||  ||||    
T  33840288 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgtattcgattctcaaaaatgacaaaatgtaaacaagaaggcagt 33840387  T
Q  153 cgggtaaatcactcaatctgtcttca 178  Q
    ||||||| ||||| | ||||||||||    
T  33840388 cgggtaagtcacttagtctgtcttca 33840413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 7140746 - 7140852
Alignment:
Q  73 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctg 172  Q
    |||||||||| |||||||||| ||||||||||| || | ||| |||||  |||| || |  || ||||| | ||||||||||||||||||||| ||  ||    
T  7140746 cttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcgggtaaatcacttaacttg 7140845  T
Q  173 tcttcat 179  Q
    |||||||    
T  7140846 tcttcat 7140852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 8680360 - 8680466
Alignment:
Q  73 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctg 172  Q
    |||||||||| |||||||||| ||||||||||| || | ||| |||||  |||| || |  || ||||| | ||||||||||| ||||||||| ||  ||    
T  8680360 cttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcggctaaatcacttaacttg 8680459  T
Q  173 tcttcat 179  Q
    |||||||    
T  8680460 tcttcat 8680466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 32413712 - 32413648
Alignment:
Q  53 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 117  Q
    |||| ||| ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  32413712 ggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggt 32413648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 6844228 - 6844163
Alignment:
Q  40 caatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 105  Q
    ||||||||| ||||||| | ||||||||||||  ||||||||| |||| | |||||||||||||||    
T  6844228 caatataagagtgggaagatgtttccaaagattgttccatcttttggatagaatgcaagtttgaac 6844163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 14677238 - 14677153
Alignment:
Q  74 ttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaa 159  Q
    ||||||||||| ||||||| ||||||| ||||  | | |||||| ||  ||||||||||||||||||||| ||||| || ||||||    
T  14677238 ttccatcttgtagacaaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgttgggtaa 14677153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 44501441 - 44501493
Alignment:
Q  53 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 105  Q
    |||| |||||||||||||| ||||||||| | ||||||||||||||| |||||    
T  44501441 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaac 44501493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 35335953 - 35335844
Alignment:
Q  37 atgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaata 136  Q
    |||||||||||| || |||||||||||||| ||||  ||||||||| ||||||||| ||||||||||||  | ||||||| ||   | |||||||||||     
T  35335953 atgcaatataagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaacaacttgtttggaatgtaataatgacaaaatg 35335854  T
Q  137 tgaaggagaa 146  Q
    ||||| ||||    
T  35335853 tgaagtagaa 35335844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 27701888 - 27701960
Alignment:
Q  45 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 117  Q
    ||||||| |||| ||||||||| ||||  |||||||||||||| | ||||  |||||||||||||||||||||    
T  27701888 taagggttggaagacgtttccagagattgttccatcttgtggaaagaatggtagtttgaacggcatgtttggt 27701960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 19658322 - 19658433
Alignment:
Q  35 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaa 134  Q
    |||||||| ||||| || |||||| ||||||| |||| | ||||||| ||||||||||  |||||||||||||||| ||| |  |   ||||||||||||    
T  19658322 gaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaa 19658421  T
Q  135 tatgaaggagaa 146  Q
    | ||||||||||    
T  19658422 tgtgaaggagaa 19658433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 19675161 - 19675272
Alignment:
Q  35 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaa 134  Q
    |||||||| ||||| || |||||| ||||||| |||| | ||||||| ||||||||||  |||||||||||||||| ||| |  |   ||||||||||||    
T  19675161 gaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaa 19675260  T
Q  135 tatgaaggagaa 146  Q
    | ||||||||||    
T  19675261 tgtgaaggagaa 19675272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 17667110 - 17667196
Alignment:
Q  73 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaa 159  Q
    |||||||||||| ||||||| ||||||| ||||  | | |||||| ||  ||||||||||||||||||||| ||||| |||||||||    
T  17667110 cttccatcttgtagacaaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgtcgggtaa 17667196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 25064332 - 25064275
Alignment:
Q  60 gtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 117  Q
    ||||||||||||  |||||||||| |||||| ||||| ||||| || |||||||||||    
T  25064332 gtttccaaagattgttccatcttggggacaatatgcatgtttggactgcatgtttggt 25064275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 43864058 - 43864104
Alignment:
Q  62 ttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggc 108  Q
    ||||||||||   |||||||| |||||||||||||||||||||||||    
T  43864058 ttccaaagattgatccatcttttggacaaaatgcaagtttgaacggc 43864104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 43875208 - 43875269
Alignment:
Q  45 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacg 106  Q
    |||| ||||||| ||  ||||||||||   |||||||| |||||||||||||||||||||||    
T  43875208 taagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacg 43875269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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