View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1021_high_1 (Length: 871)

Name: NF1021_high_1
Description: NF1021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1021_high_1
NF1021_high_1
[»] chr8 (1 HSPs)
chr8 (4-782)||(40748896-40749660)


Alignment Details
Target: chr8 (Bit Score: 656; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 4 - 782
Target Start/End: Complemental strand, 40749660 - 40748896
Alignment:
Q  4 ttccctcttctgaaaaaatggggatgggaactagcacctttgttactagatggatcaactttctcaccatggtaagtattccttttcttcttctttcctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  40749660 ttccctcttctgaaaaaatggggatgggaactagcacctttgttactagatggatcaactttctcaccatggtaagtattccttttcttct--------- 40749570  T
Q  104 tatttctactgtgaatgatgttctttatgatttactgttaattttgggttgcatttcccttacacttgttgaaatgcctgaaatttttcaaaaccggtnn 203  Q
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||      
T  40749569 -------actgtgaatgatgttctttatgatttactgttaattttaggttgcatttcccttacactggttgaaatgcctgaaatttttcaaaaccggtaa 40749477  T
Q  204 nnnnnn-tcatttgggtttgttccattttccattgcttttattgtgtttgtacttgctgttctttttgcatacccactttgtgttttgtacttgctgttc 302  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40749476 aaaaaaatcatttgggtttgttccattttccattgcttttattgtgtttgtacttgctgttctttttgcaaacccactttgtgttttgtacttgctgttc 40749377  T
Q  303 attctgttaaccctttctatttctagcaagtttttatttt-gggtactaattaattgaactctccagcattttttgttgatgttgtgcttaccactaaga 401  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749376 attctgttaaccctttctatttctagcaagtttttatttttgggtactaattaattgaactctccagcattttttgttgatgttgtgcttaccactaaga 40749277  T
Q  402 caagagacaacacccacaccacatgtagacaccaataatgattttaagagtaaatgctcaatttagtctctcacaattttttaccacattagtttgtggc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749276 caagagacaacacccacaccacatgtagacaccaataatgattttaagagtaaatgctcaatttagtctctcacaattttttaccacattagtttgtggc 40749177  T
Q  502 aatttattttacggagaacaaattagtccctaatttactataagatatggactaattgatataaaaatgtcagagactagtacaagtattattttttgtt 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40749176 aatttattttacggagaacaaattagtccctaatttactataagatatggactaattgatataaaaatgtcagagactagtacgagtattattttttgtt 40749077  T
Q  602 ggagactgtattgggccgagagaaaattgtgagaaaccaaattgtgtcttcactctaattttaaaaaagcgatttaatgtaactgtttgtgtcagcattg 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  40749076 ggagactgtattgggccgagagaaaattgtgagaaaccaaattgtgtcttcactctaatttaaaaaatgcgatttaatgtaactgtttgtgtcagcattg 40748977  T
Q  702 tgtcgatgttatattagacaaatcatatgtgctggacatcggacatgtcttcattctgaactgtgagtgctacatgatgat 782  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40748976 tgtcgatgttatattagacatatcatatgtgctggacatcggacatgtcttcattctgaactgtgagtgctacatgttgat 40748896  T

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