View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1021_low_1 (Length: 871)

Name: NF1021_low_1
Description: NF1021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1021_low_1
NF1021_low_1
[»] chr8 (1 HSPs)
chr8 (4-782)||(40748896-40749660)


Alignment Details
Target: chr8 (Bit Score: 656; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 4 - 782
Target Start/End: Complemental strand, 40749660 - 40748896
Alignment:
Q  4 ttccctcttctgaaaaaatggggatgggaactagcacctttgttactagatggatcaactttctcaccatggtaagtattccttttcttcttctttcctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  40749660 ttccctcttctgaaaaaatggggatgggaactagcacctttgttactagatggatcaactttctcaccatggtaagtattccttttcttct--------- 40749570  T
Q  104 tatttctactgtgaatgatgttctttatgatttactgttaattttgggttgcatttcccttacacttgttgaaatgcctgaaatttttcaaaaccggtnn 203  Q
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||      
T  40749569 -------actgtgaatgatgttctttatgatttactgttaattttaggttgcatttcccttacactggttgaaatgcctgaaatttttcaaaaccggtaa 40749477  T
Q  204 nnnnnn-tcatttgggtttgttccattttccattgcttttattgtgtttgtacttgctgttctttttgcatacccactttgtgttttgtacttgctgttc 302  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40749476 aaaaaaatcatttgggtttgttccattttccattgcttttattgtgtttgtacttgctgttctttttgcaaacccactttgtgttttgtacttgctgttc 40749377  T
Q  303 attctgttaaccctttctatttctagcaagtttttatttt-gggtactaattaattgaactctccagcattttttgttgatgttgtgcttaccactaaga 401  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749376 attctgttaaccctttctatttctagcaagtttttatttttgggtactaattaattgaactctccagcattttttgttgatgttgtgcttaccactaaga 40749277  T
Q  402 caagagacaacacccacaccacatgtagacaccaataatgattttaagagtaaatgctcaatttagtctctcacaattttttaccacattagtttgtggc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749276 caagagacaacacccacaccacatgtagacaccaataatgattttaagagtaaatgctcaatttagtctctcacaattttttaccacattagtttgtggc 40749177  T
Q  502 aatttattttacggagaacaaattagtccctaatttactataagatatggactaattgatataaaaatgtcagagactagtacaagtattattttttgtt 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40749176 aatttattttacggagaacaaattagtccctaatttactataagatatggactaattgatataaaaatgtcagagactagtacgagtattattttttgtt 40749077  T
Q  602 ggagactgtattgggccgagagaaaattgtgagaaaccaaattgtgtcttcactctaattttaaaaaagcgatttaatgtaactgtttgtgtcagcattg 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  40749076 ggagactgtattgggccgagagaaaattgtgagaaaccaaattgtgtcttcactctaatttaaaaaatgcgatttaatgtaactgtttgtgtcagcattg 40748977  T
Q  702 tgtcgatgttatattagacaaatcatatgtgctggacatcggacatgtcttcattctgaactgtgagtgctacatgatgat 782  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40748976 tgtcgatgttatattagacatatcatatgtgctggacatcggacatgtcttcattctgaactgtgagtgctacatgttgat 40748896  T

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