View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1021_low_3 (Length: 454)

Name: NF1021_low_3
Description: NF1021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1021_low_3
NF1021_low_3
[»] chr3 (5 HSPs)
chr3 (6-327)||(31424345-31424666)
chr3 (17-205)||(24712760-24712951)
chr3 (87-311)||(823097-823325)
chr3 (87-124)||(4637266-4637303)
chr3 (179-278)||(53279643-53279742)
[»] chr8 (4 HSPs)
chr8 (23-250)||(17819533-17819758)
chr8 (162-251)||(31503088-31503177)
chr8 (239-308)||(5221506-5221576)
chr8 (265-305)||(25184827-25184867)
[»] chr4 (2 HSPs)
chr4 (17-306)||(48567302-48567591)
chr4 (57-244)||(23440152-23440344)
[»] chr1 (5 HSPs)
chr1 (17-301)||(9613087-9613371)
chr1 (17-270)||(9081208-9081465)
chr1 (172-229)||(22200277-22200334)
chr1 (172-229)||(22235189-22235246)
chr1 (260-308)||(27905761-27905809)
[»] chr2 (6 HSPs)
chr2 (167-310)||(1946042-1946186)
chr2 (172-290)||(1945841-1945960)
chr2 (35-276)||(15817096-15817334)
chr2 (168-205)||(11199759-11199796)
chr2 (85-124)||(30598963-30599002)
chr2 (283-311)||(27740341-27740369)
[»] chr7 (4 HSPs)
chr7 (109-251)||(15126823-15126964)
chr7 (170-229)||(2613623-2613682)
chr7 (106-201)||(1819780-1819873)
chr7 (85-122)||(26386030-26386067)
[»] chr5 (1 HSPs)
chr5 (168-312)||(26367678-26367823)
[»] chr6 (4 HSPs)
chr6 (87-310)||(5746790-5747015)
chr6 (17-244)||(32316490-32316713)
chr6 (170-229)||(21029892-21029952)
chr6 (110-211)||(4554320-4554420)
[»] scaffold0127 (1 HSPs)
scaffold0127 (89-210)||(21349-21470)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 6 - 327
Target Start/End: Original strand, 31424345 - 31424666
Alignment:
Q  6 aggagcagagaggtggaggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtg 105  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  31424345 aggagtagagaggtggaggccgactaagcgttggaataggacatttttggatgtggctcaactaaggtgatgataaggtgttggttgatttagaggggtg 31424444  T
Q  106 ttttttggggtgagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtg 205  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31424445 ttttttggggtgagtagcgagcgaaggggggtgtatggatttcgtgttcaatggctgtttatgatggagtttgatttaggtggtgaagttggttttggtg 31424544  T
Q  206 attgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtattttatggtgtttcatttgggtgttccacctatatacgacg 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||    
T  31424545 attgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtattttatggtgtttaatttggatgttccgcctatatacgacg 31424644  T
Q  306 cctttatcatgtaacctctgat 327  Q
     |||||||||||||||||||||    
T  31424645 tctttatcatgtaacctctgat 31424666  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 24712760 - 24712951
Alignment:
Q  17 ggtggaggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgtttttt----g 112  Q
    |||||||||||||||||  |||||||||| |||||| || ||||||||| | ||||||| |  ||   || ||||||||||||| ||| ||||||    |    
T  24712760 ggtggaggccgactaagcattggaatatgtcattttcgggtgtggctcagcaaaggtgatgggaaaaggtggtttgatttagagaggttttttttttttg 24712859  T
Q  113 gggtgagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtg 205  Q
     |||||| |||||||||| |  ||| |||||||||||| |||| ||   ||| | ||||||||||| |||||||||| |||||||||| ||||    
T  24712860 tggtgagcagcgagcgaatga-ggtctatggatttcgttttcagtgatcgttcgcgatggagtttgttttaggtggtaaagttggtttaggtg 24712951  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 311
Target Start/End: Complemental strand, 823325 - 823097
Alignment:
Q  87 tgtttgatttagaggggtgttt--tttggggtgagtagcgagcgaagggtggtgtatggatttcgtgtt-caatggctgttt-gtgatggagtttgattt 182  Q
    ||||||| |||||| |||||||  ||| |||||||||| | |||||||||||| ||||||| |||| || || ||| ||||| ||||||||||||| |||    
T  823325 tgtttgaattagagaggtgtttcttttagggtgagtagag-gcgaagggtggt-tatggatatcgtttttcagtggttgttttgtgatggagtttgtttt 823228  T
Q  183 aggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgt-tttgtgt-attttatggtgtttcat 280  Q
    |||||||||||||  ||||||||  || ||| ||  ||||||||||| ||||   ||| ||||| | ||  |||    ||||  ||||||||||||| ||    
T  823227 aggtggtgaagttaattttggtgggtgatgtcctcatgggtgttgaaggtaggggttgattaggggttgtgtgtaagggtgtctttttatggtgtttaat 823128  T
Q  281 ttgggtgttccacctatatacgacgccttta 311  Q
    ||||||||||| | |||||||||||||||||    
T  823127 ttgggtgttccccttatatacgacgccttta 823097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 4637303 - 4637266
Alignment:
Q  87 tgtttgatttagaggggtgttttttggggtgagtagcg 124  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  4637303 tgtttgatttagaggggtgttttgtggagtgagtagcg 4637266  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 53279643 - 53279742
Alignment:
Q  179 atttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgtttt-gtgtattttatggtgttt 277  Q
    |||| ||||||||||||||| |||  | || || ||||| || |||||||| |||||||||||||||||| ||  |||||| |||| ||||||| |||||    
T  53279643 atttgggtggtgaagttggtcttgaaggttatt-ttcttatgagtgttgaaggtagatcttggttaggtggtgtgtgttttagtgttttttatgatgttt 53279741  T

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Target: chr8 (Bit Score: 116; Significance: 8e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 17819758 - 17819533
Alignment:
Q  23 ggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgttttttggggtgagtag 122  Q
    |||||||||||  ||| |||||| ||||||||| | ||||||| ||||||||| || |||  ||||||||||||||||| || |||||||||||||| ||    
T  17819758 ggccgactaagcattgaaatatgtcatttttgggtatggctcagctaaggtgacgagaagaggttgtttgatttagaggagttttttttggggtgagcag 17819659  T
Q  123 cgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttggg 222  Q
    ||||||||||| ||| |||||||||||| |||| ||| |||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  17819658 cgagcgaaggg-ggtttatggatttcgttttcagtggttgtttgcgatggagtttgatttaggtggtgaagttggttttggtggttg-tgttcttatggg 17819561  T
Q  223 tgttgaaagtagatcttggttaggtgat 250  Q
    ||||||| |||| | |||||||||||||    
T  17819560 tgttgaaggtaggttttggttaggtgat 17819533  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 31503177 - 31503088
Alignment:
Q  162 gtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatg 251  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| || |||||||  || |||||||| |||| |||||| || ||||||    
T  31503177 gtttgcgatggagtttgatttaggtggcgaagttggttttggtggttcttgttctcatgcgtgttgaaggtaggtcttgggtatgtgatg 31503088  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 5221576 - 5221506
Alignment:
Q  239 tggttaggtgatgattgttttgt-gtattttatggtgtttcatttgggtgttccacctatatacgacgcct 308  Q
    |||||||||| ||  |||||||| || |||| ||||||||| |||||||||||| |||||||||| |||||    
T  5221576 tggttaggtggtgtgtgttttgttgtcttttttggtgtttcttttgggtgttccgcctatatacggcgcct 5221506  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 25184867 - 25184827
Alignment:
Q  265 ttttatggtgtttcatttgggtgttccacctatatacgacg 305  Q
    |||||||||||||  || |||||||||||||||||||||||    
T  25184867 ttttatggtgtttacttcgggtgttccacctatatacgacg 25184827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 48567591 - 48567302
Alignment:
Q  17 ggtggaggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgttttttggggt 116  Q
    |||||| || ||||||| |||||||||  ||||||||| ||  ||||||  | |||||| || |||  ||||| |||||||||||| |||||||||||||    
T  48567591 ggtggaagctgactaagcgttggaatagaacatttttgaatacggctcagtttaggtgatgagaagaggttgtctgatttagagggatgttttttggggt 48567492  T
Q  117 gagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttg-tgatggagtttgatttaggtggtgaagttggttttggtgattgttgttc 215  Q
    ||| |||||||||| || ||| |||||||||||| |||| | || ||||  ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48567491 gagcagcgagcgaaagg-ggtttatggatttcgttttcagttgccgtttaatgatgaagtttgatttaggtggtgaagttggttttggtgattgttgttc 48567393  T
Q  216 t-tttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtattttatggtgtttcatttgggtgttccacctatatacgacgc 306  Q
    | ||| |||||| || |||||||||||||||||||||  |||||  ||| ||||||||||||   ||| |||||||| ||||||||||||||    
T  48567392 tctttaggtgtt-aaggtagatcttggttaggtgatgggtgtttaatgtcttttatggtgttgattttaggtgttccgcctatatacgacgc 48567302  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 244
Target Start/End: Complemental strand, 23440344 - 23440152
Alignment:
Q  57 tgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgttttttggggtgagtagcgagcg--aagggtggtgtatggatttcgtg--t 152  Q
    |||| |||| ||||||||| || |||| ||| ||||||||||||| ||||  ||| ||||||| |||||| |  ||| | ||| ||||||||||||   |    
T  23440344 tgtgcctcagctaaggtgatgagaaggggttatttgatttagaggagtgtaattttgggtgagcagcgagagggaagag-ggtttatggatttcgttgtt 23440246  T
Q  153 tcaatggctgtttg-tgatggagtttgatttaggtggtgaagt-tggttttggtgattgttgttcttttgggtgttgaaagtagatcttggtta 244  Q
    ||| |||  ||||  ||||||||||||||||||||||||||||  |||||| ||  |||||||| |||||||||||||| |||  |||||||||    
T  23440245 tcagtggtcgttttatgatggagtttgatttaggtggtgaagtggggttttagtagttgttgtttttttgggtgttgaaggtaagtcttggtta 23440152  T

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Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 9613371 - 9613087
Alignment:
Q  17 ggtggaggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttg-atttagaggggtgttttttgggg 115  Q
    ||||||||||||||||| |||| ||||  | ||||||||||||||||||  || | ||| || |||  |||||||  ||||| | |||| ||||||||||    
T  9613371 ggtggaggccgactaagcgttgaaataaaatatttttggatgtggctcagttatgatgatgagaagtggttgtttttatttataagggtattttttgggg 9613272  T
Q  116 tgagtagcgagcgaagggtggtgtatggatttcgtgttcaa-tggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgtt 214  Q
    |||||||||||||||||| |||  ||||||||| | ||| | ||||  |||| |||| ||||||||||||||||||||||||| ||||||| |  |||||    
T  9613271 tgagtagcgagcgaaggggggt--atggatttcattttccagtggcaatttgcgatgaagtttgatttaggtggtgaagttgggtttggtggtcattgtt 9613174  T
Q  215 cttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtattttatggtgtttcatttgggtgttccacctatatac 301  Q
    || |||||||||||| |||| |||||||||| |||||  ||||||||||||||||||||||||| ||| |||  ||| |||||||||    
T  9613173 ctattgggtgttgaaggtaggtcttggttagttgatgggtgttttgtgtattttatggtgtttctttttggtcatccgcctatatac 9613087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 9081465 - 9081208
Alignment:
Q  17 ggtggaggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgttttttggggt 116  Q
    ||||||||| |||||||  |||||||| |||| ||| |  |||||||||| |||||||| || ||   ||||||| ||||||||||||| ||||||||||    
T  9081465 ggtggaggctgactaagtattggaataggacactttcgagtgtggctcaattaaggtgatgagaataggttgttttatttagaggggtggtttttggggt 9081366  T
Q  117 gagtagcgagcgaagggtggtgtatggatttcgtgtt--caatgg-ctgtttgtgatggagtttgatttaggtggtgaagt-tggttttggtgattgttg 212  Q
     || | | || |||||| ||| |||||||||||| ||  || ||| || ||| |||| |||||||||||||||||  || |  ||||||| || ||||||    
T  9081365 tagcaacaagggaaggg-ggtttatggatttcgttttttcagtggtctatttatgatagagtttgatttaggtggcaaattagggttttgatgcttgttg 9081267  T
Q  213 ttc-ttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtattttat 270  Q
    |||   |||||||||||| |||||||||| ||| ||||||  ||| |||||| ||||||    
T  9081266 ttcagcttgggtgttgaaggtagatcttgattaagtgatgggtgtattgtgtcttttat 9081208  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 22200277 - 22200334
Alignment:
Q  172 gagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaa 229  Q
    |||||||||||||||||||| |||||||||| || | || | ||||||||||||||||    
T  22200277 gagtttgatttaggtggtgatgttggttttgatggtggtgggtcttttgggtgttgaa 22200334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 22235189 - 22235246
Alignment:
Q  172 gagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaa 229  Q
    |||||||||||||||||||| |||||||||| || | || | ||||||||||||||||    
T  22235189 gagtttgatttaggtggtgatgttggttttgatggtggtgggtcttttgggtgttgaa 22235246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 27905761 - 27905809
Alignment:
Q  260 gtgtattttatggtgtttcatttgggtgttccacctatatacgacgcct 308  Q
    |||| |||||||||||||  |||  ||||||||||||||||||||||||    
T  27905761 gtgtcttttatggtgtttattttttgtgttccacctatatacgacgcct 27905809  T

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Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 167 - 310
Target Start/End: Original strand, 1946042 - 1946186
Alignment:
Q  167 tgatggagtttgatttaggtggtgaagttg-gttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtat 265  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||||||  |||| ||||||| |||| | ||||||||||||||||||| |||||| |    
T  1946042 tgatggagtttgatttaggtggtgaagtggagttttggtggttgttgttcgcttggatgttgaaggtaggttttggttaggtgatgattgtattgtgtct 1946141  T
Q  266 tttatggtgtttcatttgggtgttccacctatatacgacgccttt 310  Q
    |||||| | |||| ||||| ||||||| |||||||| ||| ||||    
T  1946142 tttatgatatttcttttggatgttccatctatatacaacgtcttt 1946186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 290
Target Start/End: Complemental strand, 1945960 - 1945841
Alignment:
Q  172 gagtttgatttaggtggtgaagttg-gttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtattttat 270  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||| |||| ||||||||||||| | |||||||||||||| |||| |||||| ||||||    
T  1945960 gagtttgatttaggtggtgaagtggagttttggtggttgttgttcgtttgagtgttgaaagtaggttttggttaggtgatggttgtattgtgtcttttat 1945861  T
Q  271 ggtgtttcatttgggtgttc 290  Q
    ||| |||| |||||||||||    
T  1945860 ggtatttcttttgggtgttc 1945841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 276
Target Start/End: Complemental strand, 15817334 - 15817096
Alignment:
Q  35 gttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgttttttggggtgagtagcgagcgaagggt 134  Q
    |||| ||||||| |||||  ||||||| ||||||| ||||| || |||   |||||||||| |||||||| || |||||||||||||||  |||| || |    
T  15817334 gttgaaatatgaaattttcagatgtggttcaactatggtgatgaaaagagattgtttgattcagaggggt-ttatttggggtgagtagcaggcgatggat 15817236  T
Q  135 ggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtag 234  Q
    ||| |||||||||| | |||| ||||  ||||  ||||||||||||||||||||||| |||  ||||| || ||||||||||   |||||||||||||||    
T  15817235 ggt-tatggatttctttttcagtggccatttgcaatggagtttgatttaggtggtgatgtttcttttgatggttgttgttctcaagggtgttgaaagtag 15817137  T
Q  235 atcttggttaggtgatgattgt-tttgtgtattttatggtgtt 276  Q
      ||| ||||||| |||  ||| || |||||||||||||||||    
T  15817136 gacttcgttaggtaatg--tgtattagtgtattttatggtgtt 15817096  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 11199796 - 11199759
Alignment:
Q  168 gatggagtttgatttaggtggtgaagttggttttggtg 205  Q
    |||||||||||||||||| |||||||||||||||||||    
T  11199796 gatggagtttgatttaggcggtgaagttggttttggtg 11199759  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 30599002 - 30598963
Alignment:
Q  85 gttgtttgatttagaggggtgttttttggggtgagtagcg 124  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  30599002 gttgtttgatttagaggggtgttttttggtatgagtagcg 30598963  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 311
Target Start/End: Original strand, 27740341 - 27740369
Alignment:
Q  283 gggtgttccacctatatacgacgccttta 311  Q
    |||||||||||||||||||||||||||||    
T  27740341 gggtgttccacctatatacgacgccttta 27740369  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 15126964 - 15126823
Alignment:
Q  109 tttggggtgagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgatt 208  Q
    ||||||||||||||||  ||| |  |||| |||||||||| | || | ||||||||||  ||||||||||||||||||||||| |||| |||| ||| ||    
T  15126964 tttggggtgagtagcggacgatgaatggt-tatggatttcttttttagtggctgtttgcaatggagtttgatttaggtggtgatgttgttttttgtggtt 15126866  T
Q  209 gttgttcttttgggtgttgaaagtagatcttggttaggtgatg 251  Q
    ||||||||  ||||| ||||  ||||   ||||||||||||||    
T  15126865 gttgttctcatgggtattgatggtagggtttggttaggtgatg 15126823  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 2613682 - 2613623
Alignment:
Q  170 tggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaa 229  Q
    ||||||||||||||||||||||||||| |||| ||| | || | ||||||||||||||||    
T  2613682 tggagtttgatttaggtggtgaagttgatttttgtggtggtgggtcttttgggtgttgaa 2613623  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 1819873 - 1819780
Alignment:
Q  106 ttttttggggtgagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggtttt 201  Q
    |||||||| |||||||||| |||| ||||  | |||||||||||| | |||||| |||||| | ||||||||| ||||||| ||||| ||||||||    
T  1819873 ttttttggagtgagtagcg-gcgatgggtatt-tatggatttcgtttccaatggttgtttgcgttggagtttgttttaggtagtgaaattggtttt 1819780  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 26386067 - 26386030
Alignment:
Q  85 gttgtttgatttagaggggtgttttttggggtgagtag 122  Q
    ||||||||||||||||||||||||| || |||||||||    
T  26386067 gttgtttgatttagaggggtgttttgtgaggtgagtag 26386030  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 312
Target Start/End: Complemental strand, 26367823 - 26367678
Alignment:
Q  168 gatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttg-tgtatt 266  Q
    |||||||||||| ||||||||||||||||| |||| || ||||||||||  ||||||||||| | ||  ||| |||| ||||||  ||| ||| ||| ||    
T  26367823 gatggagtttgacttaggtggtgaagttggatttgatggttgttgttctcatgggtgttgaaggcaggacttagttaagtgatgtgtgtattgatgtctt 26367724  T
Q  267 ttatggtgtttcatttgggtgttccacctatatacgacgcctttat 312  Q
    | |||||||||  ||| ||||||||  ||||||||| || ||||||    
T  26367723 taatggtgttttgtttaggtgttccgtctatatacggcgtctttat 26367678  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 310
Target Start/End: Original strand, 5746790 - 5747015
Alignment:
Q  87 tgtttgatttagaggggtgttttttggg-gtgagtagcgagcgaagggtggtgtatggatttcgtgtt-caatggctgtttgtgatggagtttgatttag 184  Q
    |||||||||| |||||||||||||| || |||||||||| |||| ||||| | ||||||||| || || || ||| |||||| |||||||| || |||||    
T  5746790 tgtttgatttggaggggtgtttttttggagtgagtagcg-gcgatgggtgct-tatggatttagtttttcagtggttgtttgcgatggagtatgttttag 5746887  T
Q  185 gtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgt--tttgtgtattttatggtgtttcattt 282  Q
    | |||||| |||||||||||| |||| |   |  ||||||||||| |||| |||| | |||||||||  |||  || |||| |||  || ||||   |||    
T  5746888 gcggtgaaattggttttggtggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtgatgtgtgtaattcgtgtctttattgatgttcatttt 5746987  T
Q  283 gggtgttccacctatatacgacgccttt 310  Q
     |||||||| ||||||||||||||||||    
T  5746988 aggtgttccgcctatatacgacgccttt 5747015  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 32316490 - 32316713
Alignment:
Q  17 ggtggaggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgttttttggggt 116  Q
    |||||||||||| | || ||||||||| ||||||||||  |||| ||| ||||  | || || |||  |||||||||||  ||||||||||| | |||||    
T  32316490 ggtggaggccgaatgagcgttggaataagacatttttg--tgtgtctcgactattgagatgagaagaggttgtttgattaggaggggtgtttct-ggggt 32316586  T
Q  117 gagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttct 216  Q
    ||||| |  |||| ||||| | |||| ||||||| |||| |||   ||| |  ||||||||||| |||||| || |||| | |||||| |||||||||||    
T  32316587 gagtaacatgcgatgggtgtt-tatgaatttcgttttcagtggtcatttctcgtggagtttgatctaggtgatgcagttaggtttggtaattgttgttct 32316685  T
Q  217 tttgggtgttgaaagtagatcttggtta 244  Q
    | || |||||||| |||| |||||||||    
T  32316686 tatgtgtgttgaaggtaggtcttggtta 32316713  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 21029892 - 21029952
Alignment:
Q  170 tggagtttgatttaggtggtgaagttgg-ttttggtgattgttgttcttttgggtgttgaa 229  Q
    ||||||||||||||| |||||||||||| |||||||| | || ||||||||||||||||||    
T  21029892 tggagtttgatttagctggtgaagttggtttttggtggtggtggttcttttgggtgttgaa 21029952  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 4554420 - 4554320
Alignment:
Q  110 ttggggtgagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgattg 209  Q
    |||||||||||||||  ||| || || | ||||||||| || |||| |||  ||||| ||||||||||| |||  ||| ||||||||| |||||||||||    
T  4554420 ttggggtgagtagcggacgatggatgtt-tatggattttgttttcagtggtcgtttgcgatggagtttggtttgagtgatgaagttgggtttggtgattg 4554322  T
Q  210 tt 211  Q
    ||    
T  4554321 tt 4554320  T

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Target: scaffold0127 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 21470 - 21349
Alignment:
Q  89 tttgatttagaggggtgttttttggg-gtgagtagcgagcgaagggtggtgtatggatttcgtgtt-caatggctgtttgtgatggagtttgatttaggt 186  Q
    |||||||| |||||||||||||| || |||||||||| |||| ||||| | ||||||||| || || ||  || |||||| |||||||| || ||||||     
T  21470 tttgatttggaggggtgtttttttggagtgagtagcg-gcgatgggtgct-tatggatttagtttttcagcggttgtttgcgatggagtatgttttaggc 21373  T
Q  187 ggtgaagttggttttggtgattgt 210  Q
    |||||| |||||||||||| ||||    
T  21372 ggtgaaattggttttggtggttgt 21349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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