View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1021_low_9 (Length: 249)

Name: NF1021_low_9
Description: NF1021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1021_low_9
NF1021_low_9
[»] chr3 (1 HSPs)
chr3 (1-221)||(43682868-43683089)
[»] chr1 (2 HSPs)
chr1 (49-221)||(21914528-21914701)
chr1 (81-221)||(28956537-28956678)
[»] chr4 (1 HSPs)
chr4 (49-219)||(34857130-34857302)
[»] chr2 (2 HSPs)
chr2 (79-221)||(16880514-16880652)
chr2 (79-221)||(17038204-17038342)
[»] chr8 (1 HSPs)
chr8 (74-210)||(27806230-27806372)
[»] chr7 (1 HSPs)
chr7 (76-123)||(36223167-36223214)
[»] chr6 (1 HSPs)
chr6 (76-123)||(12986735-12986782)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43683089 - 43682868
Alignment:
Q  1 tttttcacagagcatctccaaattgtgattcagccttgatccccaaaacgtgaatgtccaaaacgtgaatactaggctgttgtgtagcgcccc-cttttt 99  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| || |||||||| | | |||||||||||||||| | ||||    
T  43683089 tttttcacagagcgtctccaaattgtgatccagccttgttccccaaaacgtgaatgtccagaaagtgaataccatgttgttgtgtagcgcccctcctttt 43682990  T
Q  100 tatatggctctggcacttgtattttcttcacatattaatcccttgctaattctctagggtccacaaattatgcatagcccaatacaccaaataatcttgc 199  Q
    ||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43682989 tatatggctctggaacttatattttcttcacatattaatcccttgttaattctctcgggtccacaaattatgcatagcccaatacaccaaataatcttgc 43682890  T
Q  200 tgctatttttccactcataact 221  Q
    ||||||||||| ||||||||||    
T  43682889 tgctatttttctactcataact 43682868  T

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Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 21914528 - 21914701
Alignment:
Q  49 cgtgaatgtccaaaacgtgaatactaggctgttgtgtagcgccccct-tttttatatggctctggcacttgtattttcttcacatattaatcccttgcta 147  Q
    |||||||||| | |||||||| || ||||||||||| ||| ||||   |||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  21914528 cgtgaatgtctagaacgtgaaaaccaggctgttgtgaagcacccctactttttatatggctctggcacttatattttcttcacatattaatcccttgtta 21914627  T
Q  148 attctctagggtccacaaattatgcatagcccaatacaccaaataatcttgctgctatttttccactcataact 221  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  21914628 attctctcgggtccacaaattatgcatagcccaatgcaccaaataatcttgctgctatttttctactcataact 21914701  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 28956678 - 28956537
Alignment:
Q  81 tgtgtagcgccccct-tttttatatggctctggcacttgtattttcttcacatattaatcccttgctaattctctagggtccacaaattatgcatagccc 179  Q
    ||||||||||||| | ||||||||||||||| |||||| ||||||||||||| ||||||| |||| |||||||||  | ||||||||||||| |||||||    
T  28956678 tgtgtagcgccccttctttttatatggctctcgcacttatattttcttcacaaattaatctcttgttaattctctccgatccacaaattatgtatagccc 28956579  T
Q  180 aatacaccaaataatcttgctgctatttttccactcataact 221  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  28956578 aatacaccaaataatcttgctgctatttttctactcataact 28956537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 49 - 219
Target Start/End: Original strand, 34857130 - 34857302
Alignment:
Q  49 cgtgaatgtccaaaacgtgaatactaggctgttgtgtagcgcccc-cttttttatatggctctggcacttgtatttt-cttcacatattaatcccttgct 146  Q
    ||||||||| || ||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||| |||||| |||||||| ||||||||||| |    
T  34857130 cgtgaatgtacagaacgtgaataccaggctgttatgtagcgcccctcctttttatatggctctggcacttatatttttcttcacatgttaatcccttgtt 34857229  T
Q  147 aattctctagggtccacaaattatgcatagcccaatacaccaaataatcttgctgctatttttccactcataa 219  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34857230 aattctctcgggtccacaaattatacatagcccaatacaccaaataatcttgctgctatttttctactcataa 34857302  T

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Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 16880652 - 16880514
Alignment:
Q  79 gttgtgtagcgcccccttttttatatggctctggcacttgtattttcttcacatattaatcccttgctaattctctagggtccacaaattatgcatagcc 178  Q
    |||||||||||||||  |||||||||||||||||||||| ||||| |||||||||||||  |||||  |||||||| |||||||||  ||||||||||||    
T  16880652 gttgtgtagcgcccc--tttttatatggctctggcacttatatttgcttcacatattaa--ccttgtaaattctcttgggtccacagcttatgcatagcc 16880557  T
Q  179 caatacaccaaataatcttgctgctatttttccactcataact 221  Q
     ||||| |||||||||||| |||||||||||| ||||||||||    
T  16880556 aaataccccaaataatcttactgctatttttctactcataact 16880514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 17038342 - 17038204
Alignment:
Q  79 gttgtgtagcgcccccttttttatatggctctggcacttgtattttcttcacatattaatcccttgctaattctctagggtccacaaattatgcatagcc 178  Q
    |||||||||||||||  |||||||||||||||||||||| ||||| |||||||||||||  |||||  |||||||| |||||||||  ||||||||||||    
T  17038342 gttgtgtagcgcccc--tttttatatggctctggcacttatatttgcttcacatattaa--ccttgtaaattctcttgggtccacagcttatgcatagcc 17038247  T
Q  179 caatacaccaaataatcttgctgctatttttccactcataact 221  Q
     ||||| |||||||||||| |||||||||||| ||||||||||    
T  17038246 aaataccccaaataatcttactgctatttttctactcataact 17038204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 27806230 - 27806372
Alignment:
Q  74 aggctgttgtgtagcgcccccttttttatatggctct--ggcacttgtattttctt-cacatattaatcccttgctaattctctagggtccacaaattat 170  Q
    ||||||||| ||| ||||||| |||||||||||||||  | ||||| ||||| ||| ||||||||||  |||||  |||||||| |||||||| | ||||    
T  27806230 aggctgttgcgtaacgcccccctttttatatggctctctgacacttatatttgctttcacatattaa--ccttgtaaattctctcgggtccaccacttat 27806327  T
Q  171 gcat---agccca--atacaccaaataatcttgctgctatttttc 210  Q
    ||||   ||||||  ||||||||||||||||||| ||||||||||    
T  27806328 gcatgatagcccacaatacaccaaataatcttgccgctatttttc 27806372  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 36223167 - 36223214
Alignment:
Q  76 gctgttgtgtagcgcccccttttttatatggctctggcacttgtattt 123  Q
    ||||||||||||||||||  |||||||||||||||||| ||| |||||    
T  36223167 gctgttgtgtagcgcccctctttttatatggctctggcgcttctattt 36223214  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 12986735 - 12986782
Alignment:
Q  76 gctgttgtgtagcgcccccttttttatatggctctggcacttgtattt 123  Q
    ||||||||||||| ||||  |||||||||||||||||||||| |||||    
T  12986735 gctgttgtgtagcacccctctttttatatggctctggcacttctattt 12986782  T

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