View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10220_high_1 (Length: 427)

Name: NF10220_high_1
Description: NF10220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10220_high_1
NF10220_high_1
[»] chr4 (6 HSPs)
chr4 (194-405)||(830813-831025)
chr4 (23-103)||(830641-830721)
chr4 (60-96)||(2717225-2717261)
chr4 (204-240)||(315692-315728)
chr4 (204-240)||(6555874-6555910)
chr4 (60-96)||(53849963-53849999)
[»] chr7 (2 HSPs)
chr7 (202-240)||(27689324-27689362)
chr7 (60-96)||(19532554-19532590)
[»] scaffold0036 (1 HSPs)
scaffold0036 (203-240)||(10880-10917)
[»] chr8 (2 HSPs)
chr8 (203-240)||(290604-290641)
chr8 (203-240)||(4718222-4718259)
[»] chr5 (1 HSPs)
chr5 (203-240)||(42774407-42774444)
[»] chr3 (2 HSPs)
chr3 (203-240)||(46175586-46175623)
chr3 (203-240)||(53163279-53163316)
[»] scaffold0211 (1 HSPs)
scaffold0211 (204-240)||(15880-15916)
[»] chr2 (1 HSPs)
chr2 (60-96)||(2112512-2112548)
[»] chr1 (1 HSPs)
chr1 (60-96)||(26674703-26674739)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 194 - 405
Target Start/End: Original strand, 830813 - 831025
Alignment:
Q  194 ggtttatggaaaattatggatatttatagggaccattaacttaattatttttaatgtaaattaagaaaaaccaagccccatagcacttattttatcgtaa 293  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  830813 ggtttatggaaaattatggatatttataggtaccgttaacttaattaattttaatgtaaattaagaaaaaccaagccccatagtgcttattttatcgtaa 830912  T
Q  294 atgatatctgttataattccaaaaaatgcataaactatttttcgtaaatgaccccattataatagtgttttcgaataaaaatacatactat-aatgttta 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  830913 atgatatctgttataattccaaaaaatgcataaactatttttcgtaaatgaccccattataatagtgttttcgaataaaaatacatactataaatgttta 831012  T
Q  393 tggaaaatacata 405  Q
    |||||||||||||    
T  831013 tggaaaatacata 831025  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 830641 - 830721
Alignment:
Q  23 ttcagaatttcatttttaatccttataaataaattactttttagtccatgtaaaaagtttccgtcaacatttttaatccct 103  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  830641 ttcagaatttcatttttagtccctataaataaattactttttagtccatgtaaaaagtttccgtcaacatttttgatccct 830721  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 2717261 - 2717225
Alignment:
Q  60 tttttagtccatgtaaaaagtttccgtcaacattttt 96  Q
    ||||||||||||||||||| |||||||||||||||||    
T  2717261 tttttagtccatgtaaaaattttccgtcaacattttt 2717225  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 315728 - 315692
Alignment:
Q  204 aaattatggatatttatagggaccattaacttaatta 240  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  315728 aaattttggatatttatagggaccatttacttaatta 315692  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 6555910 - 6555874
Alignment:
Q  204 aaattatggatatttatagggaccattaacttaatta 240  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  6555910 aaattctggatatttatagggaccatttacttaatta 6555874  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 53849999 - 53849963
Alignment:
Q  60 tttttagtccatgtaaaaagtttccgtcaacattttt 96  Q
    |||||||||| |||||||| |||||||||||||||||    
T  53849999 tttttagtccttgtaaaaaatttccgtcaacattttt 53849963  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 27689362 - 27689324
Alignment:
Q  202 gaaaattatggatatttatagggaccattaacttaatta 240  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  27689362 gaaaattatgaatatttatagggaccatttacttaatta 27689324  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 19532554 - 19532590
Alignment:
Q  60 tttttagtccatgtaaaaagtttccgtcaacattttt 96  Q
    |||||||||| |||||||| |||||||||||||||||    
T  19532554 tttttagtccttgtaaaaaatttccgtcaacattttt 19532590  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 10880 - 10917
Alignment:
Q  203 aaaattatggatatttatagggaccattaacttaatta 240  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  10880 aaaattatggatatttataaggaccatttacttaatta 10917  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 290604 - 290641
Alignment:
Q  203 aaaattatggatatttatagggaccattaacttaatta 240  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  290604 aaaattatgaatatttatagggaccatttacttaatta 290641  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 4718222 - 4718259
Alignment:
Q  203 aaaattatggatatttatagggaccattaacttaatta 240  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  4718222 aaaattatgaatatttatagggaccatttacttaatta 4718259  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 42774444 - 42774407
Alignment:
Q  203 aaaattatggatatttatagggaccattaacttaatta 240  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  42774444 aaaattatggttatttatagggaccatttacttaatta 42774407  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 46175623 - 46175586
Alignment:
Q  203 aaaattatggatatttatagggaccattaacttaatta 240  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  46175623 aaaattatgaatatttatagggaccatttacttaatta 46175586  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 53163279 - 53163316
Alignment:
Q  203 aaaattatggatatttatagggaccattaacttaatta 240  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  53163279 aaaattatgaatatttatagggaccatttacttaatta 53163316  T

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Target: scaffold0211 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 15880 - 15916
Alignment:
Q  204 aaattatggatatttatagggaccattaacttaatta 240  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  15880 aaattctggatatttatagggaccatttacttaatta 15916  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 2112548 - 2112512
Alignment:
Q  60 tttttagtccatgtaaaaagtttccgtcaacattttt 96  Q
    |||||||||| |||||||| |||||||||||||||||    
T  2112548 tttttagtccttgtaaaaaatttccgtcaacattttt 2112512  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 26674739 - 26674703
Alignment:
Q  60 tttttagtccatgtaaaaagtttccgtcaacattttt 96  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  26674739 tttttagtccatgtaaaaaatttccatcaacattttt 26674703  T

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