View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10220_high_5 (Length: 205)

Name: NF10220_high_5
Description: NF10220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10220_high_5
NF10220_high_5
[»] chr8 (2 HSPs)
chr8 (22-205)||(17028872-17029057)
chr8 (22-205)||(17559308-17559493)
[»] scaffold0400 (2 HSPs)
scaffold0400 (22-179)||(7504-7660)
scaffold0400 (22-108)||(13947-14033)
[»] scaffold0365 (2 HSPs)
scaffold0365 (22-179)||(8148-8304)
scaffold0365 (22-108)||(14590-14676)
[»] chr1 (10 HSPs)
chr1 (25-127)||(14468880-14468982)
chr1 (22-108)||(15033597-15033683)
chr1 (22-108)||(15038176-15038262)
chr1 (25-108)||(14531596-14531679)
chr1 (22-108)||(14521493-14521579)
chr1 (22-108)||(15003278-15003364)
chr1 (22-108)||(15012166-15012252)
chr1 (22-108)||(15041738-15041823)
chr1 (25-146)||(14505113-14505234)
chr1 (25-118)||(14483886-14483979)
[»] chr7 (7 HSPs)
chr7 (35-108)||(15664197-15664270)
chr7 (25-102)||(17824977-17825054)
chr7 (25-108)||(16103988-16104071)
chr7 (25-113)||(16173743-16173831)
chr7 (25-108)||(15676017-15676100)
chr7 (25-108)||(14607059-14607142)
chr7 (25-108)||(16026233-16026316)
[»] scaffold0289 (1 HSPs)
scaffold0289 (48-116)||(13364-13432)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 5e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 17029057 - 17028872
Alignment:
Q  22 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttctataacaaacaatg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17029057 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctcatttacttccattgtgtatgcaagttctataacaaacaatg 17028958  T
Q  122 agagttttcaatgtcaaaaatagggctttaaaaacaaacatataatgtagacaatta--acaaaccgtaaactggaaaatcattat 205  Q
    |||||| ||| ||||||||||| || || ||| ||||||||| ||||| ||||| ||  ||||||  |||| || |||||||||||    
T  17028957 agagttatcactgtcaaaaataaggattcaaatacaaacataaaatgtcgacaaataatacaaactataaagtgaaaaatcattat 17028872  T

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Target: chr8; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 17559493 - 17559308
Alignment:
Q  22 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttctataacaaacaatg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17559493 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctcatttacttccattgtgtatgcaagttctataacaaacaatg 17559394  T
Q  122 agagttttcaatgtcaaaaatagggctttaaaaacaaacatataatgtagacaatta--acaaaccgtaaactggaaaatcattat 205  Q
    |||||| ||| ||||||||||| || || ||| ||||||||| ||||| ||||| ||  ||||||  |||| || |||||||||||    
T  17559393 agagttatcactgtcaaaaataaggattcaaatacaaacataaaatgtcgacaaataatacaaactataaagtgaaaaatcattat 17559308  T

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Target: scaffold0400 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 7660 - 7504
Alignment:
Q  22 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttctataacaaacaatg 121  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||| |     
T  7660 tgctttccaaaaagtatttccaaggttaatatcccaaaactatacacatcacacttctcatttacttccattgtgtatgcaagttctgtaacaaacacta 7561  T
Q  122 agagttttcaatgtcaaaaatagggctttaaaaacaaacatataatgtagacaattaa 179  Q
    |||||| ||||||| |||||||||| ||  ||||||||||    ||||||||||||||    
T  7560 agagttatcaatgtgaaaaataggg-ttccaaaacaaacaggatatgtagacaattaa 7504  T

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Target: scaffold0400; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 14033 - 13947
Alignment:
Q  22 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  14033 tgctttccataaagtatttccaaggttaatatcccaaaactatacacatcacatttctcatttacttccattgtgtatgcaagttct 13947  T

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Target: scaffold0365 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 8304 - 8148
Alignment:
Q  22 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttctataacaaacaatg 121  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||| |     
T  8304 tgctttccaaaaagtatttccaaggttaatatcccaaaactatacacatcacacttctcatttacttccattgtgtatgcaagttctgtaacaaacacta 8205  T
Q  122 agagttttcaatgtcaaaaatagggctttaaaaacaaacatataatgtagacaattaa 179  Q
    |||||| ||||||| |||||||||| ||  ||||||||||    ||||||||||||||    
T  8204 agagttatcaatgtgaaaaataggg-ttccaaaacaaacaggatatgtagacaattaa 8148  T

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Target: scaffold0365; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 14676 - 14590
Alignment:
Q  22 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  14676 tgctttccataaagtatttccaaggttaatatcccaaaactatacacatcacatttctcatttacttccattgtgtatgcaagttct 14590  T

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Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 14468982 - 14468880
Alignment:
Q  25 tttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttctataacaaacaatgaga 124  Q
    ||||||| ||| ||||||||||||||||| || |||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||    
T  14468982 tttccaagaagcatttccaaggttaatactccaaaactatacacatcacacttctcatttacttccattgtgtatgcaagttctgtaacaaacaataaga 14468883  T
Q  125 gtt 127  Q
    |||    
T  14468882 gtt 14468880  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 15033683 - 15033597
Alignment:
Q  22 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||    
T  15033683 tgctttccaaaaagtatttccaaggttaatatcccaaaactaaacacatcacatttctcatttacttccattgtgtatgcaagttct 15033597  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 15038262 - 15038176
Alignment:
Q  22 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    ||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  15038262 tgctttccaaaaagtatttccaaggttaatatcccaaaaccatacacatcacatttctcatttacttccattgtgtatgcaagttct 15038176  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 14531596 - 14531679
Alignment:
Q  25 tttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  14531596 tttccaaaaagtatttccaaggtcaatatcccaaaactatacacatcacatttctcatttacttccattgtgtatgcaagttct 14531679  T

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Target: chr1; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 14521493 - 14521579
Alignment:
Q  22 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    |||||||| |||||||||||||||||||| | ||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  14521493 tgctttccgaaaagtatttccaaggttaaaatcccaaaactatacacatcacatttctcatttacttccattgtgtatgcaagttct 14521579  T

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Target: chr1; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 15003364 - 15003278
Alignment:
Q  22 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    |||||||||||||| |||||||||||||||| ||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||    
T  15003364 tgctttccaaaaagcatttccaaggttaatatcccaaaactaaacacatcacatttctcatttacttccattgtgtatgcaagttct 15003278  T

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Target: chr1; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 15012252 - 15012166
Alignment:
Q  22 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    ||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||| ||| ||||||||||||||||||||||||||||    
T  15012252 tgctttccaaaaagtatttccaaggttaatatcccaaaactatatacatcgcatttcttatttacttccattgtgtatgcaagttct 15012166  T

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Target: chr1; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 15041823 - 15041738
Alignment:
Q  22 tgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  15041823 tgctttccaaaatgtatttccaaggttaataccccaaaactatacacatcacatttctca-ttacttccattgtgtatgcaagttct 15041738  T

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Target: chr1; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 14505234 - 14505113
Alignment:
Q  25 tttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttctataacaaacaatgaga 124  Q
    ||||||| ||||||||||| | ||||||| || |||||||||||||||||  ||| ||||||||||||||| |||||||||||| || |||||| | |||    
T  14505234 tttccaagaagtatttccaggcttaatactccaaaactatacacatcacacttctcatttacttccattgtatatgcaagttctgtagcaaacactaaga 14505135  T
Q  125 gttttcaatgtcaaaaataggg 146  Q
    ||| ||| | | ||||||||||    
T  14505134 gttatcattttgaaaaataggg 14505113  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 14483979 - 14483886
Alignment:
Q  25 tttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttctataacaaaca 118  Q
    ||||||| ||||||||||| | ||||||| || |||||||||||||||||  |||  ||||| |  |||||||||| ||||||| |||||||||    
T  14483979 tttccaagaagtatttccaggcttaatactccaaaactatacacatcacacttctcgtttacgtttattgtgtatgtaagttctgtaacaaaca 14483886  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 15664197 - 15664270
Alignment:
Q  35 gtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    |||||||||| |  |||||||| |||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  15664197 gtatttccaatgccaataccccaaaactatacacatcacacttctcatttacttccattgtgtatgcaagttct 15664270  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 17824977 - 17825054
Alignment:
Q  25 tttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgca 102  Q
    |||||||||||| ||||||| | ||||||||| |||||||||||||||||| ||| ||| |||| |||||||||||||    
T  17824977 tttccaaaaagtttttccaatgctaataccccaaaactatacacatcacatttctcattcacttgcattgtgtatgca 17825054  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 16104071 - 16103988
Alignment:
Q  25 tttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||||||  ||| ||| ||||   |||||||||||||||||    
T  16104071 tttccaaaaagtgtttccaatgctaataccccgaaactatacacatcacacttctcattcacttttgttgtgtatgcaagttct 16103988  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 16173831 - 16173743
Alignment:
Q  25 tttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttctataac 113  Q
    |||||||| ||||||||||| | |||||| || |||||||||||||||||  |||   |||||| | ||||||||||||||||| ||||    
T  16173831 tttccaaacagtatttccaatgctaatactccaaaactatacacatcacacttctcggttactttcgttgtgtatgcaagttctgtaac 16173743  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 15676017 - 15676100
Alignment:
Q  25 tttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    |||||| | ||||||||||| | ||||| ||| |||||||||||||||||  ||  ||| ||||||||||||||||||| ||||    
T  15676017 tttccatatagtatttccaatgctaatatcccaaaactatacacatcacacttcacattcacttccattgtgtatgcaaattct 15676100  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 14607142 - 14607059
Alignment:
Q  25 tttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    |||||||||||||||||||| | |||||| || ||||| |||||||||||  |||  || ||||   |||||||||||||||||    
T  14607142 tttccaaaaagtatttccaatgctaatactccaaaactgtacacatcacacttctcgttcacttttgttgtgtatgcaagttct 14607059  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 16026316 - 16026233
Alignment:
Q  25 tttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttct 108  Q
    |||||||||||||||||||| | |||||| || ||||| |||||||||||  |||  || ||||   |||||||||||||||||    
T  16026316 tttccaaaaagtatttccaatgctaatactccaaaactgtacacatcacacttctcgttcacttttgttgtgtatgcaagttct 16026233  T

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Target: scaffold0289 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 13364 - 13432
Alignment:
Q  48 taataccccgaaactatacacatcacatctctaatttacttccattgtgtatgcaagttctataacaaa 116  Q
    ||||||||| |||||||||||||||||  ||| ||| |||||||| |||||||||| ||||||| ||||    
T  13364 taataccccaaaactatacacatcacacttctcattcacttccatagtgtatgcaaattctataccaaa 13432  T

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