View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10220_low_3 (Length: 286)
Name: NF10220_low_3
Description: NF10220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10220_low_3 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 15725 - 15992
Alignment:
| Q |
1 |
gaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaaaatatctggatttcg |
100 |
Q |
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| T |
15725 |
gaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacg |
15824 |
T |
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| Q |
101 |
caggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatcttaacgtcttccata |
200 |
Q |
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| T |
15825 |
cgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccata |
15924 |
T |
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| Q |
201 |
ctacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaat |
268 |
Q |
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| T |
15925 |
ctacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaat |
15992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 25893 - 26160
Alignment:
| Q |
1 |
gaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaaaatatctggatttcg |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
25893 |
gaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacg |
25992 |
T |
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| Q |
101 |
caggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatcttaacgtcttccata |
200 |
Q |
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| T |
25993 |
cgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccata |
26092 |
T |
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| Q |
201 |
ctacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaat |
268 |
Q |
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| T |
26093 |
ctacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaat |
26160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 36059 - 36326
Alignment:
| Q |
1 |
gaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaaaatatctggatttcg |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
36059 |
gaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacg |
36158 |
T |
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| Q |
101 |
caggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatcttaacgtcttccata |
200 |
Q |
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| T |
36159 |
cgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccata |
36258 |
T |
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| Q |
201 |
ctacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaat |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36259 |
ctacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaat |
36326 |
T |
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