View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10220_low_4 (Length: 284)
Name: NF10220_low_4
Description: NF10220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10220_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 682228 - 682499
Alignment:
| Q |
1 |
ccaagacagggttttagtgacaaaatgtttatcatcatttttaggaatttaagttacttcattggtgtcaatacagggccacagtgacaaaatgttgtgc |
100 |
Q |
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| T |
682228 |
ccaagacagggttttagtgacaaaatgtttatcatcatttttaggaatttaagttacttcattggtgtcaatacagggccacagtaacaaaatgttgtgc |
682327 |
T |
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| Q |
101 |
tcactgctctgtattttgcttcnnnnnnnn-gggtgcttgtgtgagctatagtgatttttcaaaagaacaacacatgttgtctgaaatgaattttcaccc |
199 |
Q |
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| T |
682328 |
tcactgctctgtattttgcttctttttttttgggtgcttttgtgagctatagtgatttttcaaaagaacaacacatgttgtctgaaatgaattttcaccc |
682427 |
T |
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| Q |
200 |
agcaataattttttcctcatgatgttatacatcataggtagtattaataattcaacattgatgttctgatgt |
271 |
Q |
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| T |
682428 |
agcaataattttttcctcatgatgttatacatcataggtagtattaataattcaacattgatgttctgatgt |
682499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 682191 - 682256
Alignment:
| Q |
31 |
atcatcatttttaggaatttaagttacttcattggtgtcaatacagggccacagtgacaaaatgtt |
96 |
Q |
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| T |
682191 |
atcagcatttttaggaatttaagttacttcattggtgccaagacagggttttagtgacaaaatgtt |
682256 |
T |
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