View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10220_low_6 (Length: 238)
Name: NF10220_low_6
Description: NF10220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10220_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 4353780 - 4354004
Alignment:
| Q |
16 |
tttgtgacaaagtacttatatattaaatgaaggtaatatggattttcatttataaatccattttaattatatatttttatt--cataagaaatcaccgta |
113 |
Q |
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| T |
4353780 |
tttgtgacaaagtacttatatattaaatgaaggtaatatggattttcatttatagatccattttaattttatatttttattatcataagaaatcaccgta |
4353879 |
T |
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| Q |
114 |
tttgatcttttggcaccctagtaattctacagaatatttgttttttgttctaagagttcaatagcaaagctcacacacactacaaatattattattaata |
213 |
Q |
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| T |
4353880 |
tttgatcttttggcaccctagtaattctacagaatatttgttttttgttctaagagttcaatagcaaagctcacacacactacaaatattattattaata |
4353979 |
T |
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| Q |
214 |
ctgcaatctgtgtataataattttc |
238 |
Q |
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| T |
4353980 |
ctacaatctgtgtataataattttc |
4354004 |
T |
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