View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10220_low_7 (Length: 237)

Name: NF10220_low_7
Description: NF10220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10220_low_7
NF10220_low_7
[»] chr5 (19 HSPs)
chr5 (45-222)||(11048241-11048418)
chr5 (3-216)||(10716514-10716727)
chr5 (3-216)||(10746560-10746773)
chr5 (1-216)||(10605211-10605426)
chr5 (9-218)||(10565460-10565669)
chr5 (1-221)||(10739961-10740181)
chr5 (8-209)||(10581461-10581662)
chr5 (48-209)||(10762423-10762584)
chr5 (60-216)||(10612169-10612325)
chr5 (24-200)||(10588018-10588194)
chr5 (26-203)||(10651763-10651940)
chr5 (50-203)||(10659670-10659823)
chr5 (43-203)||(10559370-10559530)
chr5 (44-203)||(19605445-19605604)
chr5 (39-200)||(7193481-7193642)
chr5 (122-203)||(9825523-9825604)
chr5 (77-206)||(9835940-9836069)
chr5 (143-199)||(10551280-10551336)
chr5 (173-209)||(10216487-10216523)
[»] scaffold0692 (1 HSPs)
scaffold0692 (26-209)||(7738-7921)
[»] chr6 (5 HSPs)
chr6 (26-209)||(12900015-12900198)
chr6 (26-207)||(12932726-12932907)
chr6 (26-209)||(12907635-12907818)
chr6 (41-209)||(12958523-12958691)
chr6 (50-209)||(12949078-12949237)
[»] chr2 (1 HSPs)
chr2 (26-209)||(17922978-17923161)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 11048241 - 11048418
Alignment:
Q  45 tatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggat 144  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||| |||||||||||||||||    
T  11048241 tatcaggaagtgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatgggtgggtcttctaccggtaagcatttccaacataaggat 11048340  T
Q  145 tccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgtagaaaaagttgttg 222  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11048341 tccaaagctatacatgtcaccacacgtggacacttcagaacccattccatactctaaaacatgtagaaaaagttgttg 11048418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 10716514 - 10716727
Alignment:
Q  3 catctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttc 102  Q
    |||||||||||| |||| || | ||||||||| || ||||||| ||||||||||||  |||||||||||||||||||||||||||||||| ||||| |||    
T  10716514 catctcttgatacaagatgtggatccaaaatctttataagattgtcaggaaatgaagatgcaacaaagttatgcagattttgaccatcttgaaaaaattc 10716613  T
Q  103 attagcgggtcttctaccggtaagaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaa 202  Q
    || || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||    
T  10716614 atcagtgggtcttctaccggtaagcatttccaacataaggattccaaagctatacatgtcaccacatgtggacacttcagaacccattccatactctgaa 10716713  T
Q  203 acatgtagaaaaag 216  Q
    |||||||| |||||    
T  10716714 acatgtagcaaaag 10716727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 10746560 - 10746773
Alignment:
Q  3 catctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttc 102  Q
    |||||||||||| |||| |  ||||||| ||  || |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  10746560 catctcttgatagaagatgcgggtccaagatatttataagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttc 10746659  T
Q  103 attagcgggtcttctaccggtaagaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaa 202  Q
    || || |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||    
T  10746660 atcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaa 10746759  T
Q  203 acatgtagaaaaag 216  Q
    |||||||| |||||    
T  10746760 acatgtagcaaaag 10746773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 10605426 - 10605211
Alignment:
Q  1 tacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaact 100  Q
    ||||||||||| || |||  || |||||||||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  10605426 tacatctcttgttacaaggtgtgggtccaaaatctctttaatattatcaggaaatgaagttgcaacaaagttatgcagattttgaccatcttgaaaaact 10605327  T
Q  101 tcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactcta 200  Q
    |||| || |||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||  | ||||||||| |||||||||||||||||     
T  10605326 tcatcagtgggtctcctaccagtaagtatttccaacatcaggattccaaagctatacatgtcaccacatatagacacttcagaacccattccatactctg 10605227  T
Q  201 aaacatgtagaaaaag 216  Q
    ||||||||||||||||    
T  10605226 aaacatgtagaaaaag 10605211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 10565669 - 10565460
Alignment:
Q  9 ttgatataagacgtcggtccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagc 108  Q
    |||||| |||| || ||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | | || ||     
T  10565669 ttgataaaagatgtgggtccaaaatcttcttaagattaccaggaaatgatattgcaacaaagttatgcagattttgaccatcttcaaaagcgtgatcagt 10565570  T
Q  109 gggtcttctaccggtaagaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgt 208  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||| ||||||  |||||| ||||||||||||||||||    
T  10565569 gggtcttctaccggtaagcatttccaacataaagattccaaagctatacatatcaccacatgtggatacttcagcacccatcccatactctaaaacatgt 10565470  T
Q  209 agaaaaagtt 218  Q
    |  |||||||    
T  10565469 aacaaaagtt 10565460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10739961 - 10740181
Alignment:
Q  1 tacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaact 100  Q
    ||||||||||| |  |||| || |||||||||||  | |||  ||| ||||||| ||| |||| ||||||||||| |||||||||||||||| |||||||    
T  10739961 tacatctcttgcttcaagatgtgggtccaaaatctctataatgttaccaggaaacgaagttgctacaaagttatgtagattttgaccatcttgaaaaact 10740060  T
Q  101 tcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactcta 200  Q
    |||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | || ||||||||| ||||||||||||||||||    
T  10740061 tcatcagtgggtcttctaccggtaagtatttccaacataaggattccaaagctatacatgtcaccagatgttgacacttcagaacccattccatactcta 10740160  T
Q  201 aaacatgtagaaaaagttgtt 221  Q
    ||||||| || ||||||||||    
T  10740161 aaacatgcagcaaaagttgtt 10740181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 10581662 - 10581461
Alignment:
Q  8 cttgatataagacgtcggtccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattag 107  Q
    ||||||| |||| || ||||||||||  | ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | | || ||    
T  10581662 cttgataaaagatgtgggtccaaaattttcttaagattagcaggaaatgatattgcaacaaagttatgcagattttgaccatcttcaaaagcgtgatcag 10581563  T
Q  108 cgggtcttctaccggtaagaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatg 207  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  || |||||| ||||||| |||||||||||| ||||    
T  10581562 tgggtcttctaccggtaagcatttccaacataaggattccaaagctatacatgtcaccacatgcagatacttcagaacccatcccatactctaaagcatg 10581463  T
Q  208 ta 209  Q
    ||    
T  10581462 ta 10581461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 10762423 - 10762584
Alignment:
Q  48 caggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattcc 147  Q
    |||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||||| |||| ||||||||||| |||    
T  10762423 caggaaatgaagctgctacaaagttatgcagattttgaccatcttgaaaaacttcatcagtgggtcttctaccagtaagtattttcaacataaggactcc 10762522  T
Q  148 aaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta 209  Q
    ||||||||||||||||||| | || ||||||||| |||||||||||||||||||||||||||    
T  10762523 aaagctatacatgtcaccagatgttgacacttcagaacccattccatactctaaaacatgta 10762584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 60 - 216
Target Start/End: Complemental strand, 10612325 - 10612169
Alignment:
Q  60 ttgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctatacat 159  Q
    |||||||||||||||| ||||||||| ||||||||||  | |||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10612325 ttgcaacaaagttatgtagattttgatcatcttcaaatgcctcatcagtgggtcttctaccggtaagcatttccaacataaggattccaaagctatacat 10612226  T
Q  160 gtcaccacacgtggacacttcaaaacccattccatactctaaaacatgtagaaaaag 216  Q
     |||||||| ||||| ||||||  |||||| |||||||||||||||||||| |||||    
T  10612225 atcaccacatgtggatacttcagcacccatcccatactctaaaacatgtagcaaaag 10612169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 10588018 - 10588194
Alignment:
Q  24 ggtccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggt 123  Q
    |||||||||||  | ||||||||||  |||||||| || |||||||  |||| |||||||||||||||||||| | |||||  | ||||||||| |||||    
T  10588018 ggtccaaaatctgtataagattatcttgaaatgaactttcaacaaacatatgtagattttgaccatcttcaaacatttcatctgtgggtcttcttccggt 10588117  T
Q  124 aagaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactcta 200  Q
     |  |||||||||||||| || ||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||    
T  10588118 gatcatttccaacataagcatcccaaagctatacatgtcaccagatgtggatacttcagaacccattccatactcta 10588194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 10651763 - 10651940
Alignment:
Q  26 tccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaa 125  Q
    |||||||||  | ||| ||||| ||||||||||||| |||||||  |||||| ||||||||| |||||||| | | |||  |  |||||||| |||||||    
T  10651763 tccaaaatctgtataatattattaggaaatgaaattccaacaaacatatgcaaattttgaccttcttcaaacattccatctgttggtcttcttccggtaa 10651862  T
Q  126 gaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaa 203  Q
    | |||||||||||||| |  || |||||||||||||||||| | ||||| | |||| |||||||||||||||||||||    
T  10651863 gcatttccaacataagcaccccgaagctatacatgtcaccatatgtggatatttcagaacccattccatactctaaaa 10651940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 10659670 - 10659823
Alignment:
Q  50 ggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaa 149  Q
    |||||||||||| |||||||  |||||||||||||||| |||||||| | |||||  |  |||||||| |||||||| |||||||||| ||| |  || |    
T  10659670 ggaaatgaaatttcaacaaatatatgcagattttgaccctcttcaaacatttcatccgttggtcttcttccggtaagcatttccaacagaagcaccccga 10659769  T
Q  150 agctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaa 203  Q
    |||||||||||||||||   ||||| |  ||| |||||||||||||||||||||    
T  10659770 agctatacatgtcaccatgtgtggatatctcagaacccattccatactctaaaa 10659823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 10559530 - 10559370
Alignment:
Q  43 attatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataagg 142  Q
    ||||| |||||||||| || ||||| |   |||||||||||||||||||  ||| | ||||| ||  |||||||| || ||||  |||||||| |||||     
T  10559530 attattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagc 10559431  T
Q  143 attccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaa 203  Q
    || |||||||||||||||||||||   ||||| |||||| |||||||||||||||||||||    
T  10559430 atcccaaagctatacatgtcaccatgtgtggaaacttcagaacccattccatactctaaaa 10559370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 19605445 - 19605604
Alignment:
Q  44 ttatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataagga 143  Q
    |||||||||||||||||| ||||| |   | |||||||||||||||||  ||| |  ||||  |  |||||||| || ||||| |||||||| ||||| |    
T  19605445 ttatcaggaaatgaaatttcaacatacaaacgcagattttgaccatctgtaaacatgtcatccgtcggtcttcttcccgtaagcatttccaatataagca 19605544  T
Q  144 ttccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaa 203  Q
    | |||||||||||||| ||||||   ||||| |||||| ||| |||||||||||||||||    
T  19605545 tcccaaagctatacatatcaccatgtgtggaaacttcagaactcattccatactctaaaa 19605604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 200
Target Start/End: Complemental strand, 7193642 - 7193481
Alignment:
Q  39 taagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacat 138  Q
    ||||||||| ||| || |||||| |||||||  || | |||||||||||||  ||||| | |||||   | ||||| || |||||||||||||||||||     
T  7193642 taagattattaggcaacgaaatttcaacaaaaatacgtagattttgaccattgtcaaacatttcatctaccggtctccttccggtaagaatttccaacaa 7193543  T
Q  139 aaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactcta 200  Q
    ||| || || ||||||||||| |||||| | || || |||||| ||||||||||||| ||||    
T  7193542 aagcatcccgaagctatacatatcaccatatgtagatacttcagaacccattccatattcta 7193481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 9825604 - 9825523
Alignment:
Q  122 gtaagaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaa 203  Q
    ||||| |||||||| ||| | |||||||||||||||||||||||| | ||||| |||| | || ||||||||||||||||||    
T  9825604 gtaagcatttccaatataggaattccaaagctatacatgtcaccataagtggaaactttagaatccattccatactctaaaa 9825523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 206
Target Start/End: Original strand, 9835940 - 9836069
Alignment:
Q  77 agattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctatacatgtcaccacacgtggaca 176  Q
    |||||||||||||| |||||   |||||  |  |||||||| || ||||  ||||||||||  || || ||||||||||||||||||||| | || ||      
T  9835940 agattttgaccatcctcaaatctttcatctgtaggtcttcttccagtaatcatttccaacacgagcatcccaaagctatacatgtcaccatatgttgatg 9836039  T
Q  177 cttcaaaacccattccatactctaaaacat 206  Q
    ||||| ||||||||||||||||||||||||    
T  9836040 cttcagaacccattccatactctaaaacat 9836069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 10551336 - 10551280
Alignment:
Q  143 attccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactct 199  Q
    |||||||||||||||||||||||    || ||||| |||||||||||||||||||||    
T  10551336 attccaaagctatacatgtcaccttcagttgacacctcaaaacccattccatactct 10551280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 10216487 - 10216523
Alignment:
Q  173 gacacttcaaaacccattccatactctaaaacatgta 209  Q
    |||||||||| |||||||||||||||||||| |||||    
T  10216487 gacacttcaacacccattccatactctaaaatatgta 10216523  T

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Target: scaffold0692 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 7921 - 7738
Alignment:
Q  26 tccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaa 125  Q
    ||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||    
T  7921 tccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaa 7822  T
Q  126 gaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta 209  Q
    | ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||||||    
T  7821 gcatttccagcataaggattccaaagctatacatgtcaccacatgtggatacttcttaacccatcccatactctaaaacatgta 7738  T

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Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 12900198 - 12900015
Alignment:
Q  26 tccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaa 125  Q
    ||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||    
T  12900198 tccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaa 12900099  T
Q  126 gaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta 209  Q
    | ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||  ||||||| ||||||||||||| |||||    
T  12900098 gcatttccagcataaggattccaaagctatacatgtcaccacaagtggatacttctgaacccatcccatactctaaaatatgta 12900015  T

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Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 12932907 - 12932726
Alignment:
Q  26 tccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaa 125  Q
    ||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||  | |||||||||||| ||||    
T  12932907 tccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcggtgggtcttctaccagtaa 12932808  T
Q  126 gaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatg 207  Q
    | ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||||    
T  12932807 gcatttccagcataaggattccaaagctatacatgtcaccacatgtggaaacttctgaacccatcccatactctaaaacatg 12932726  T

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Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 12907818 - 12907635
Alignment:
Q  26 tccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaa 125  Q
    ||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||    
T  12907818 tccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaa 12907719  T
Q  126 gaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta 209  Q
    | ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||  ||||||  ||||||||||||| |||||    
T  12907718 gcatttccagcataaggattccaaagctatacatgtcaccacaagtggatacttctgaacccaccccatactctaaaatatgta 12907635  T

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Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 41 - 209
Target Start/End: Complemental strand, 12958691 - 12958523
Alignment:
Q  41 agattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataa 140  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||| ||||||| |||||    
T  12958691 agattatcaggaaatgaatttgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaagcatttccagcataa 12958592  T
Q  141 ggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta 209  Q
    |||||||||||||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||||||    
T  12958591 ggattccaaagctatacatgtcaccacatgtggatacttctgaacccatcccatactctaaaacatgta 12958523  T

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Target: chr6; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 12949237 - 12949078
Alignment:
Q  50 ggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaa 149  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||| ||||||| ||||||||||||||    
T  12949237 ggaaatgaaattttaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaa 12949138  T
Q  150 agctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta 209  Q
    ||||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||||||    
T  12949137 agctatacatgtcaccacaagtggatacttccgaacccatcccatactctaaaacatgta 12949078  T

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Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 17922978 - 17923161
Alignment:
Q  26 tccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaa 125  Q
    ||||||||| || |||||||   |||||||||||||| |||||||||||| ||||||||||| |||| ||||| |||||  | ||||||||| |||||||    
T  17922978 tccaaaatctttataagattgcaaggaaatgaaattgtaacaaagttatgtagattttgaccgtctttaaaaagttcatcggtgggtcttcttccggtaa 17923077  T
Q  126 gaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta 209  Q
    | ||||||| ||||||||||||||||||||||||||||||| | ||||| |||||  ||||||| ||||||||||||| |||||    
T  17923078 gcatttccagcataaggattccaaagctatacatgtcaccataagtggatacttctgaacccatcccatactctaaaatatgta 17923161  T

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