View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10220_low_9 (Length: 218)

Name: NF10220_low_9
Description: NF10220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10220_low_9
NF10220_low_9
[»] chr7 (22 HSPs)
chr7 (53-114)||(7112932-7112993)
chr7 (169-218)||(8078285-8078334)
chr7 (169-218)||(30440686-30440735)
chr7 (169-218)||(44343664-44343713)
chr7 (175-218)||(20275531-20275574)
chr7 (169-218)||(34008905-34008954)
chr7 (163-216)||(34695115-34695168)
chr7 (175-214)||(32143192-32143231)
chr7 (169-218)||(18915003-18915052)
chr7 (170-214)||(973074-973118)
chr7 (170-218)||(31638766-31638814)
chr7 (170-218)||(39219603-39219651)
chr7 (170-218)||(43581358-43581406)
chr7 (175-218)||(727408-727451)
chr7 (175-218)||(7719529-7719572)
chr7 (175-214)||(43679365-43679404)
chr7 (170-216)||(47879059-47879105)
chr7 (170-216)||(47914157-47914203)
chr7 (181-214)||(7113358-7113391)
chr7 (169-214)||(12893298-12893343)
chr7 (169-218)||(31401586-31401635)
chr7 (169-214)||(40996922-40996967)
[»] chr8 (15 HSPs)
chr8 (170-218)||(42937250-42937298)
chr8 (169-218)||(23115436-23115485)
chr8 (169-218)||(42735545-42735594)
chr8 (170-218)||(7507167-7507215)
chr8 (167-218)||(24214859-24214910)
chr8 (175-218)||(26374696-26374739)
chr8 (175-218)||(41478992-41479035)
chr8 (169-218)||(24502039-24502088)
chr8 (179-218)||(26373704-26373743)
chr8 (169-218)||(2705087-2705136)
chr8 (169-218)||(32711550-32711599)
chr8 (170-215)||(42938388-42938433)
chr8 (175-214)||(43959552-43959591)
chr8 (169-214)||(5576893-5576938)
chr8 (169-214)||(8543408-8543453)
[»] chr5 (10 HSPs)
chr5 (175-218)||(5273230-5273273)
chr5 (169-218)||(7016965-7017014)
chr5 (169-218)||(21146956-21147005)
chr5 (170-218)||(33656311-33656359)
chr5 (163-218)||(32158167-32158222)
chr5 (169-214)||(43319135-43319180)
chr5 (175-218)||(16894127-16894170)
chr5 (170-218)||(27459217-27459265)
chr5 (170-216)||(6460682-6460728)
chr5 (170-216)||(27786210-27786256)
[»] chr3 (21 HSPs)
chr3 (163-218)||(996354-996409)
chr3 (169-218)||(3206465-3206514)
chr3 (169-218)||(12734109-12734158)
chr3 (169-218)||(19253715-19253764)
chr3 (170-218)||(37820746-37820794)
chr3 (167-218)||(33996760-33996811)
chr3 (169-218)||(16010751-16010800)
chr3 (169-214)||(22057651-22057696)
chr3 (169-218)||(33808071-33808120)
chr3 (169-213)||(20498098-20498142)
chr3 (175-218)||(29029900-29029943)
chr3 (169-216)||(29449131-29449178)
chr3 (169-218)||(10139415-10139464)
chr3 (169-217)||(40246732-40246780)
chr3 (175-214)||(6589457-6589496)
chr3 (181-216)||(35337635-35337670)
chr3 (168-218)||(52114417-52114467)
chr3 (169-218)||(25418254-25418303)
chr3 (169-218)||(51699748-51699797)
chr3 (165-213)||(45926990-45927038)
chr3 (170-218)||(54625481-54625529)
[»] scaffold0037 (1 HSPs)
scaffold0037 (169-218)||(100100-100149)
[»] chr6 (5 HSPs)
chr6 (169-218)||(2301006-2301055)
chr6 (169-218)||(6197746-6197795)
chr6 (169-214)||(29076485-29076530)
chr6 (169-214)||(29111458-29111503)
chr6 (170-218)||(1391513-1391561)
[»] chr4 (23 HSPs)
chr4 (169-218)||(22201903-22201952)
chr4 (169-214)||(41881357-41881402)
chr4 (170-218)||(24131241-24131289)
chr4 (170-216)||(27454361-27454407)
chr4 (164-218)||(31314997-31315051)
chr4 (169-218)||(1044698-1044747)
chr4 (169-218)||(39479626-39479675)
chr4 (169-218)||(40537414-40537463)
chr4 (169-214)||(42786655-42786700)
chr4 (170-218)||(7250042-7250090)
chr4 (170-218)||(25445983-25446030)
chr4 (169-216)||(30009948-30009995)
chr4 (175-218)||(46635912-46635955)
chr4 (170-216)||(28541587-28541633)
chr4 (170-216)||(55302732-55302778)
chr4 (169-218)||(25331019-25331068)
chr4 (179-216)||(32951107-32951144)
chr4 (176-216)||(7007268-7007308)
chr4 (162-218)||(37046721-37046777)
chr4 (175-213)||(20021238-20021276)
chr4 (175-213)||(44775947-44775985)
chr4 (169-213)||(37915673-37915717)
chr4 (170-214)||(49469210-49469254)
[»] chr2 (18 HSPs)
chr2 (169-218)||(9120058-9120107)
chr2 (167-216)||(16269579-16269628)
chr2 (169-218)||(24776245-24776294)
chr2 (169-218)||(31170895-31170944)
chr2 (170-218)||(22552034-22552082)
chr2 (175-218)||(14198847-14198890)
chr2 (175-218)||(44765671-44765714)
chr2 (169-218)||(12407270-12407319)
chr2 (169-218)||(20605042-20605091)
chr2 (181-216)||(32125152-32125187)
chr2 (167-218)||(35316950-35317001)
chr2 (175-213)||(378875-378913)
chr2 (169-214)||(305742-305787)
chr2 (169-218)||(1789332-1789381)
chr2 (169-216)||(14920619-14920666)
chr2 (169-216)||(26601473-26601520)
chr2 (175-209)||(5093317-5093351)
chr2 (169-217)||(43847536-43847584)
[»] chr1 (19 HSPs)
chr1 (169-218)||(953701-953750)
chr1 (169-218)||(28824641-28824690)
chr1 (169-218)||(49417966-49418015)
chr1 (169-217)||(19452120-19452168)
chr1 (167-218)||(35279552-35279603)
chr1 (170-216)||(35679399-35679445)
chr1 (168-218)||(49198536-49198586)
chr1 (169-214)||(730031-730076)
chr1 (169-218)||(21222030-21222079)
chr1 (169-218)||(22183252-22183301)
chr1 (169-218)||(45760279-45760328)
chr1 (175-214)||(47654627-47654666)
chr1 (171-213)||(48524204-48524246)
chr1 (169-214)||(6304527-6304572)
chr1 (169-218)||(28541386-28541435)
chr1 (169-218)||(33025394-33025443)
chr1 (169-216)||(50192822-50192869)
chr1 (180-218)||(31572432-31572470)
chr1 (170-218)||(47780502-47780550)
[»] scaffold0651 (1 HSPs)
scaffold0651 (164-218)||(8646-8700)
[»] scaffold0113 (1 HSPs)
scaffold0113 (169-218)||(39122-39171)
[»] scaffold0004 (1 HSPs)
scaffold0004 (170-216)||(102026-102072)
[»] scaffold0151 (1 HSPs)
scaffold0151 (170-218)||(38789-38837)
[»] scaffold0472 (1 HSPs)
scaffold0472 (163-213)||(1926-1976)


Alignment Details
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 7112932 - 7112993
Alignment:
Q  53 acttcttatgttttgtcgtgtattacatattaaatattgtcaatactcccgtatgatttgta 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||    
T  7112932 acttcttatgttttgtcatgtattacatattaaatattgtcaatactcccatatgacttgta 7112993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 8078285 - 8078334
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  8078285 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 8078334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 30440686 - 30440735
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  30440686 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 30440735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 44343713 - 44343664
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  44343713 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 44343664  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 20275574 - 20275531
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  20275574 tattggatcatgattctaagggattttaaaagacttttttatca 20275531  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 34008905 - 34008954
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  34008905 ggggtgtattggatcatgattctaagggattttaaaagatttttttatca 34008954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 34695115 - 34695168
Alignment:
Q  163 actaaaggggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    ||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  34695115 actaagggggtgtattgaatcatgattctaagggattttaaaagacttttttat 34695168  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 32143231 - 32143192
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  32143231 tattggatcatgattctaagggattttaaaagactttttt 32143192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 18915052 - 18915003
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||  | ||||||||||||||||||||||||||||    
T  18915052 ggggtgtattggatcatgtatctaagggattttaaaagacttttttatca 18915003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 973074 - 973118
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||    
T  973074 gggtgtattggatcatgattctaagggattttaaaagattttttt 973118  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 31638766 - 31638814
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||| ||||||||| |||| |||||||||||||||||||||||    
T  31638766 gggtgtattgaatcatgattctaagagattttaaaagacttttttatca 31638814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 39219651 - 39219603
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||||||||| ||| ||||| ||||||||||||||||||||||    
T  39219651 gggtgtattggatcataattctaaggaattttaaaagacttttttatca 39219603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 43581406 - 43581358
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||||||||||||| ||| | ||||||||||||||||||||||    
T  43581406 gggtgtattggatcatgattctaaagaattttaaaagacttttttatca 43581358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 727408 - 727451
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||    
T  727408 tattggatcatgattctaatggattttaaatgacttttttatca 727451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 7719572 - 7719529
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||||||| |||  |||||||||||||||||||||||    
T  7719572 tattggatcatgattgtaaaagattttaaaagacttttttatca 7719529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 43679365 - 43679404
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  43679365 tattggatcatgattctaagggattttaaaagattttttt 43679404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 47879059 - 47879105
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    |||| ||||| ||||||||| |||||||||||||||||||| |||||    
T  47879059 gggtgtattgaatcatgattctaagggattttaaaagacttatttat 47879105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 47914157 - 47914203
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    |||| ||||| ||||||||| |||||||||||||||||||| |||||    
T  47914157 gggtgtattgaatcatgattctaagggattttaaaagacttatttat 47914203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 7113358 - 7113391
Alignment:
Q  181 atcatgattttaagggattttaaaagactttttt 214  Q
    ||||||||| ||||||||||||||||||||||||    
T  7113358 atcatgattctaagggattttaaaagactttttt 7113391  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 12893298 - 12893343
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||| ||||||||||||||| ||||| ||||||||||| ||||||    
T  12893298 ggggtgtattggatcatgattctaaggtattttaaaagattttttt 12893343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 31401586 - 31401635
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||| | | ||||||||||||||||||||    
T  31401586 ggggtgtattggatcatgattctaaagaactttaaaagacttttttatca 31401635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 40996967 - 40996922
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||| ||||||||||||||| ||||||||||||||| | ||||||    
T  40996967 ggggtgtattggatcatgattctaagggattttaaaatattttttt 40996922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 42937250 - 42937298
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42937250 gggtgtattggatcatgattttaagggattttaaaagacttttttatca 42937298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 23115485 - 23115436
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  23115485 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 23115436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 42735594 - 42735545
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  42735594 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 42735545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 7507215 - 7507167
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  7507215 gggtgtattggatcatgattctaagggattttaaaagacttttttatca 7507167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 24214910 - 24214859
Alignment:
Q  167 aaggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  24214910 aaggggtgtattggatcatgattctaaaggattttaaaagacttttttatca 24214859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 26374739 - 26374696
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  26374739 tattggatcatgattctaagggattttaaaagacttttttatca 26374696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 41478992 - 41479035
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  41478992 tattggatcatgattctaagggattttaaaagacttttttatca 41479035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 24502088 - 24502039
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  24502088 ggggtgtattggatcatgattctaaaggattttaaaagacttttttatca 24502039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 26373704 - 26373743
Alignment:
Q  179 ggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  26373704 ggatcatgattctaagggattttaaaagacttttttatca 26373743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 2705136 - 2705087
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||| ||||||||||||| ||||||||||    
T  2705136 ggggtgtattggatcatgattgtaaaggattttaaaagatttttttatca 2705087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 32711599 - 32711550
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| |||| || ||||||||||||||||||||    
T  32711599 ggggtgtattggatcatgattctaagagactttaaaagacttttttatca 32711550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 42938433 - 42938388
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagactttttta 215  Q
    |||| |||||||| || |||||||||||||||||||||||||||||    
T  42938433 gggtttattggattataattttaagggattttaaaagactttttta 42938388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 43959552 - 43959591
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagactttttt 214  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  43959552 tatttgatcatgattttaaaggattttaaaagactttttt 43959591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 5576938 - 5576893
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||| |||||||| |||||| ||||||||||||||||| ||||||    
T  5576938 ggggtgtattggattatgattctaagggattttaaaagattttttt 5576893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 8543408 - 8543453
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||| |||| |||||||||| ||||||||||||||||| ||||||    
T  8543408 ggggtgtattagatcatgattctaagggattttaaaagattttttt 8543453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 5273273 - 5273230
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5273273 tattggatcatgattttaagggattttaaaagacttttttatca 5273230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 7017014 - 7016965
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  7017014 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 7016965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 21146956 - 21147005
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  21146956 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 21147005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 33656359 - 33656311
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  33656359 gggtgtattggatcatgattttaagggattttaaaagatttttttatca 33656311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 32158222 - 32158167
Alignment:
Q  163 actaaaggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  32158222 actaagggggtatattgaatcatgattctaaggaattttaaaagacttttttatca 32158167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 43319135 - 43319180
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  43319135 ggggtgtattggatcatgattctaagggattttaaaagactttttt 43319180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 16894170 - 16894127
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||    
T  16894170 tattggatcataattctaagggattttaaaagacttttttatca 16894127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 27459265 - 27459217
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||||||||||||| ||| ||||||||||| ||||||||||||    
T  27459265 gggtgtattggatcatgattctaacggattttaaaaaacttttttatca 27459217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 6460682 - 6460728
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    |||| ||||| ||||||||| ||||||||||||||||| ||||||||    
T  6460682 gggtgtattgaatcatgattctaagggattttaaaagatttttttat 6460728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 27786210 - 27786256
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    |||| |||||||| | ||||| |||||||||||||||||||||||||    
T  27786210 gggtgtattggattaagatttcaagggattttaaaagacttttttat 27786256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 996409 - 996354
Alignment:
Q  163 actaaaggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  996409 actaagggggtgtattggatcatgattctaagggattttaaaagacttttttatca 996354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 3206514 - 3206465
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  3206514 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 3206465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 12734158 - 12734109
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  12734158 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 12734109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 19253715 - 19253764
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  19253715 ggggtttattggatcatgattctaagggattttaaaagacttttttatca 19253764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 37820794 - 37820746
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  37820794 gggtatattggataatgattctaagggattttaaaagacttttttatca 37820746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 33996811 - 33996760
Alignment:
Q  167 aaggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||    
T  33996811 aaggggtgtattggatcatgattctaagggattttgaaagacttttttatca 33996760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 16010751 - 16010800
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||||||    
T  16010751 ggggtgtattggatcataattctaagggattttaaaagacttttttatca 16010800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 22057651 - 22057696
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  22057651 ggggtgtattggatcatgattctaagggattttaaaagactttttt 22057696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 33808120 - 33808071
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||||||    
T  33808120 ggggtgtattgaatcatgattctaagggattttaaaagacttttttatca 33808071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 20498098 - 20498142
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttt 213  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||    
T  20498098 ggggtgtattggatcatgattctaagggattttaaaagacttttt 20498142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 29029900 - 29029943
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||||||| |||||||||||||||||||||| |||||    
T  29029900 tattggatcatgattctaagggattttaaaagacttttatatca 29029943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 29449178 - 29449131
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    ||||| |||| |||||||||| ||||||||||||||||||||||||||    
T  29449178 ggggtgtattagatcatgattataagggattttaaaagacttttttat 29449131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 10139464 - 10139415
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||| ||||||||| ||||||||||||||| ||||||||||||    
T  10139464 ggggtgtattgaatcatgattctaagggattttaaaatacttttttatca 10139415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 40246732 - 40246780
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatc 217  Q
    ||||| ||||||||||||||| |||| |||||||||| |||||||||||    
T  40246732 ggggtgtattggatcatgattctaagagattttaaaaaacttttttatc 40246780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 6589457 - 6589496
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  6589457 tattggatcatgattctaagggactttaaaagactttttt 6589496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 35337635 - 35337670
Alignment:
Q  181 atcatgattttaagggattttaaaagacttttttat 216  Q
    ||||||||| ||||||||||||||||||||||||||    
T  35337635 atcatgattctaagggattttaaaagacttttttat 35337670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 52114417 - 52114467
Alignment:
Q  168 aggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||||| || |||||||||||| ||||| ||||||||||| ||||||||||    
T  52114417 aggggtgtactggatcatgattctaaggaattttaaaagatttttttatca 52114467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 25418254 - 25418303
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||    
T  25418254 ggggtttattggatcatgattctaagagattttaaaaaatttttttatca 25418303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 51699797 - 51699748
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| |||  |||||||||||| ||||||||||    
T  51699797 ggggtgtattggatcatgattataaaagattttaaaagatttttttatca 51699748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 45927038 - 45926990
Alignment:
Q  165 taaaggggtatattggatcatgattttaagggattttaaaagacttttt 213  Q
    ||||||||| ||||||||   |||||||| |||||||||||||||||||    
T  45927038 taaaggggtgtattggattgagattttaaaggattttaaaagacttttt 45926990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 54625481 - 54625529
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||||||||||||| |||| ||||||| |||| ||||||||||    
T  54625481 gggtgtattggatcatgattctaagagattttagaagatttttttatca 54625529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 100100 - 100149
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  100100 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 100149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 2301055 - 2301006
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  2301055 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 2301006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 6197795 - 6197746
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  6197795 ggggtgtattggatcatgattctaagggattttaaaaaacttttttatca 6197746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 29076485 - 29076530
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||    
T  29076485 ggggtgtattggatcatgattctaagagattttaaaagactttttt 29076530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 29111458 - 29111503
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||    
T  29111458 ggggtgtattggatcatgattctaagagattttaaaagactttttt 29111503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 1391513 - 1391561
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||||||||||||| ||| |||||||||| |||||||||||||    
T  1391513 gggtgtattggatcatgattctaaaggattttaaatgacttttttatca 1391561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 22201903 - 22201952
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  22201903 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 22201952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 41881402 - 41881357
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  41881402 ggggtgtattggatcatgattttaagggattttaaaagactttttt 41881357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 24131289 - 24131241
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  24131289 gggtgtattggatcatgattctaagggattttaaaagacttttttatca 24131241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 27454407 - 27454361
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  27454407 gggtatattggatcatgattttaaggaattttaaaagactgttttat 27454361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 31315051 - 31314997
Alignment:
Q  164 ctaaaggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||| || ||||||||||||||| ||||||||||||||||| ||||||||||    
T  31315051 ctaaaggagtgtattggatcatgattctaagggattttaaaagatttttttatca 31314997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 1044698 - 1044747
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  1044698 ggggtgtattggatcatgattctaagggattttaaaagatttttttatca 1044747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 39479675 - 39479626
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  39479675 ggggtgtattggatcatgattttaagaaattttaaaagacttttttatca 39479626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 40537463 - 40537414
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| |||||    
T  40537463 ggggtgtattggatcatgattgtaagggattttaaaagacttttgtatca 40537414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 42786655 - 42786700
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  42786655 ggggtgtattggatcatgattctaagggattttaaaagactttttt 42786700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 7250090 - 7250042
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  7250090 gggtgtattggatcatgattctaaggaattttaaaagacttttttatca 7250042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 25445983 - 25446030
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||    
T  25445983 gggtgtattggat-atgattttaagggattttaaaagacttttttatca 25446030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 30009995 - 30009948
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    ||||| ||||||||||||||| |||||||||||||||||| |||||||    
T  30009995 ggggtgtattggatcatgattctaagggattttaaaagacatttttat 30009948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 46635955 - 46635912
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||||||| |||| |||||||||||||||||||||||    
T  46635955 tattggatcatgattctaagagattttaaaagacttttttatca 46635912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 28541587 - 28541633
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||    
T  28541587 gggtgtattggatcatgattctaagggattttaaaagacatttttat 28541633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 55302732 - 55302778
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||    
T  55302732 gggtgtattgaatcatgattttaagggattttagaagacttttttat 55302778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 25331019 - 25331068
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| |||  |||||||||||||||||||||||    
T  25331019 ggggtgtattggatcatgattctaaaagattttaaaagacttttttatca 25331068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 32951144 - 32951107
Alignment:
Q  179 ggatcatgattttaagggattttaaaagacttttttat 216  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  32951144 ggatcatgattctaagggattttaaaagacttttttat 32951107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 7007268 - 7007308
Alignment:
Q  176 attggatcatgattttaagggattttaaaagacttttttat 216  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  7007268 attgaatcatgattttaagggattttaatagacttttttat 7007308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 37046777 - 37046721
Alignment:
Q  162 tactaaaggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||| |||| ||||||||||||||| ||||| |||||||||||  |||||||||    
T  37046777 tactaaacgggtgtattggatcatgattctaaggaattttaaaagatatttttatca 37046721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 20021238 - 20021276
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttt 213  Q
    |||||||| || |||||||||||||||||||||||||||    
T  20021238 tattggattataattttaagggattttaaaagacttttt 20021276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 44775985 - 44775947
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttt 213  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  44775985 tattggatcatgattctaatggattttaaaagacttttt 44775947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 37915673 - 37915717
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttt 213  Q
    ||||| |||||||| |||||| || ||||||||||||||||||||    
T  37915673 ggggtgtattggattatgattctatgggattttaaaagacttttt 37915717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 49469210 - 49469254
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    |||| |||||||||||||||  |||| ||||||||||||||||||    
T  49469210 gggtgtattggatcatgattccaaggaattttaaaagactttttt 49469254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 9120058 - 9120107
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  9120058 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 9120107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 16269579 - 16269628
Alignment:
Q  167 aaggggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  16269579 aaggggtgtattggatcatgattctaagggattttaaaagacttttttat 16269628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 24776245 - 24776294
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  24776245 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 24776294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 31170944 - 31170895
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  31170944 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 31170895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 22552082 - 22552034
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  22552082 gggtgtattggatcatgattctaagggattttaaaagacttttttatca 22552034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 14198890 - 14198847
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  14198890 tattggatcatgattctaagggattttaaaagacttttttatca 14198847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 44765671 - 44765714
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  44765671 tattggatcatgattctaagggattttaaaagacttttttatca 44765714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 12407270 - 12407319
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||||||    
T  12407270 ggggtgtattggatcatgattctaagagattttaaaagacttttttatca 12407319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 20605042 - 20605091
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  20605042 ggggtgtattggatcatgattctaagggattttaaaagactttttaatca 20605091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 32125152 - 32125187
Alignment:
Q  181 atcatgattttaagggattttaaaagacttttttat 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  32125152 atcatgattttaagggattttaaaagacttttttat 32125187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 35316950 - 35317001
Alignment:
Q  167 aaggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||    
T  35316950 aaggggtgtattgaatcatgattctaagggattttaaaaaacttttttatca 35317001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 378875 - 378913
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagacttttt 213  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  378875 tattggatcatgattataagggattttaaaagacttttt 378913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 305787 - 305742
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||    
T  305787 ggggtgtattggatcatgattctaagcgattttaaaagactttttt 305742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 1789332 - 1789381
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| |||| |||||||||||| ||||||||||    
T  1789332 ggggtgtattggatcatgattctaagagattttaaaagatttttttatca 1789381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 14920666 - 14920619
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    ||||| ||||||||  ||||||||| ||||||||||||||||||||||    
T  14920666 ggggtgtattggattgtgattttaaaggattttaaaagacttttttat 14920619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 26601520 - 26601473
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    ||||| |||||||||||| || ||| ||||||||||||||||||||||    
T  26601520 ggggtgtattggatcatgtttctaaaggattttaaaagacttttttat 26601473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 5093351 - 5093317
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagact 209  Q
    ||||||||||||||| |||||||||||||||||||    
T  5093351 tattggatcatgattctaagggattttaaaagact 5093317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 43847536 - 43847584
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatc 217  Q
    ||||| |||| |||||||  | |||||||||||||||||||||||||||    
T  43847536 ggggtgtattagatcatgtatctaagggattttaaaagacttttttatc 43847584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 953701 - 953750
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  953701 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 953750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 28824690 - 28824641
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  28824690 ggggtgtattggatcatgattctaagggattttaaaagacttttttatca 28824641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 49417966 - 49418015
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  49417966 ggggtatattggatcatgattctaagagattttaaaagacttttttatca 49418015  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 19452168 - 19452120
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatc 217  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  19452168 ggggtgtattggatcatgattctaagggattttaaaagacttttttatc 19452120  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 35279552 - 35279603
Alignment:
Q  167 aaggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||||||||||    
T  35279552 aaggggtgtattggatcatgattctaagagattttaaaagacttttttatca 35279603  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 35679445 - 35679399
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  35679445 gggtgtattgaatcatgattttaagggattttaaaagacttttttat 35679399  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 49198586 - 49198536
Alignment:
Q  168 aggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  49198586 aggggtgtattggatcatgattctaaggaattttaaaagacttttttatca 49198536  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 730031 - 730076
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  730031 ggggtgtattggatcatgattctaagggattttaaaagactttttt 730076  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 21222030 - 21222079
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| |||||||||||||||| |||||||||||    
T  21222030 ggggtgtattggatcatgattctaagggattttaaaaggcttttttatca 21222079  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 22183252 - 22183301
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  22183252 ggggtgtattggatcatgattctaaaggattttaaaagacttttttatca 22183301  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 45760328 - 45760279
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  45760328 ggggtgtattggatcatgattctaagggattttaaaagatttttttatca 45760279  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 47654666 - 47654627
Alignment:
Q  175 tattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  47654666 tattggatcatgattctaagggattttaaaagactttttt 47654627  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 48524204 - 48524246
Alignment:
Q  171 ggtatattggatcatgattttaagggattttaaaagacttttt 213  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  48524204 ggtatattggatcatgattctaaggaattttaaaagacttttt 48524246  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 6304572 - 6304527
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagactttttt 214  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  6304572 ggggtgtattggatcatgattctaaaggattttaaaagactttttt 6304527  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 28541386 - 28541435
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| |||| |||||||||||| ||||||||||    
T  28541386 ggggtgtattggatcatgattctaagcgattttaaaagatttttttatca 28541435  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 33025394 - 33025443
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| |||| || ||||||||||||||||||||    
T  33025394 ggggtgtattggatcatgattctaagagaatttaaaagacttttttatca 33025443  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 50192869 - 50192822
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    ||||| ||||| ||||||||| ||||| ||||||||||||||||||||    
T  50192869 ggggtgtattgaatcatgattctaaggaattttaaaagacttttttat 50192822  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 31572470 - 31572432
Alignment:
Q  180 gatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  31572470 gatcatgattctaagggattttaagagacttttttatca 31572432  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 47780502 - 47780550
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||||||||||||| ||||  ||||||||||| ||||||||||    
T  47780502 gggtgtattggatcatgattctaagaaattttaaaagatttttttatca 47780550  T

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Target: scaffold0651 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 8646 - 8700
Alignment:
Q  164 ctaaaggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||||| || ||||||||||||||| ||||||||||||||||| ||||||||||    
T  8646 ctaaaggagtgtattggatcatgattctaagggattttaaaagatttttttatca 8700  T

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Target: scaffold0113 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 39171 - 39122
Alignment:
Q  169 ggggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  39171 ggggtgtattggatcatgattctaatggattttaaaagacttttttatca 39122  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 102026 - 102072
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttat 216  Q
    |||| |||| |||||||||| ||||||||||||||||||||||||||    
T  102026 gggtgtattagatcatgattctaagggattttaaaagacttttttat 102072  T

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Target: scaffold0151 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 38837 - 38789
Alignment:
Q  170 gggtatattggatcatgattttaagggattttaaaagacttttttatca 218  Q
    |||| ||||||||||||||| |||||||||||||||||  |||||||||    
T  38837 gggtgtattggatcatgattctaagggattttaaaagatatttttatca 38789  T

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Target: scaffold0472 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 1976 - 1926
Alignment:
Q  163 actaaaggggtatattggatcatgattttaagggattttaaaagacttttt 213  Q
    ||||| ||||| ||||| |||| ||||||||| ||||||||||||||||||    
T  1976 actaagggggtgtattgaatcaagattttaagagattttaaaagacttttt 1926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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