View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10221_high_5 (Length: 241)
Name: NF10221_high_5
Description: NF10221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10221_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 20089621 - 20089842
Alignment:
| Q |
17 |
actcactgctacatgtaatgctgttcctcttccctttatttttatcttgtgaaaatatacatcttctttgtatttttctatcacttcttcccatttgtct |
116 |
Q |
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| T |
20089621 |
actcactgctacatgtaatgctgttcctcttccctttattcttctcctgtgaaaaaatacatgttcttcgtatttttttataacttcttcccatttgtct |
20089720 |
T |
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| Q |
117 |
tccattacaaactcgcggaacacgggagctacatttttgttgtcacaaaataaaatagtaagacatacaataattaatgtcacattaacaaattggagga |
216 |
Q |
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| T |
20089721 |
tccattacaaactcgcggaacccggcagctacatatttgttgtcacaaaataaaatagtaagacatacaataattaatgtcacattaaaaaattggagga |
20089820 |
T |
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| Q |
217 |
aaaaatgtcagaaatattgaac |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
20089821 |
aaaaatgtcagaaatattgaac |
20089842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 20123481 - 20123623
Alignment:
| Q |
21 |
actgctacatgtaatgctgttcctcttccctttatttttatcttgtgaaaatatacatcttctttgtatttttctatcacttcttcccatttgtcttcca |
120 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||| |
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| T |
20123481 |
actgccacatgtaatgctgttcctcttccctttattcttatcttgtgaaaatatacatgttcttcgtatttatctatcacttctttccatttgtcttcca |
20123580 |
T |
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| Q |
121 |
ttacaaactcgcggaacacgggagctacatttttgttgtcaca |
163 |
Q |
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| T |
20123581 |
ttacaaactcgcggaacacggcagctacatatttgttgtcaca |
20123623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 19896338 - 19896235
Alignment:
| Q |
17 |
actcactgctacatgtaatgctgttcctcttccctttatttttatcttgtgaaaatatacatcttctttgtatttttctatcacttcttcccatttgtct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||||| ||| |||||||||||||| ||| |
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| T |
19896338 |
actcactgctacatgtaatgctgttcctcttccctttattcttatcttgtgaaaaaatacatgttcttcgtatttttttataacttcttcccatttctct |
19896239 |
T |
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| Q |
117 |
tcca |
120 |
Q |
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|||| |
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| T |
19896238 |
tcca |
19896235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 20123918 - 20123969
Alignment:
| Q |
162 |
caaaataaaatagtaagacatacaataattaatgtcacattaacaaattgga |
213 |
Q |
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| T |
20123918 |
caaaataaaatagtaagacatacaatatttaatgtcatataaaaaaattgga |
20123969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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