View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10221_low_13 (Length: 239)

Name: NF10221_low_13
Description: NF10221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10221_low_13
NF10221_low_13
[»] chr4 (6 HSPs)
chr4 (90-193)||(18692374-18692476)
chr4 (121-181)||(5083209-5083269)
chr4 (90-177)||(18674294-18674389)
chr4 (121-171)||(18718903-18718953)
chr4 (124-179)||(18650691-18650746)
chr4 (121-170)||(18683098-18683147)
[»] scaffold0349 (1 HSPs)
scaffold0349 (92-179)||(17817-17903)
[»] chr6 (16 HSPs)
chr6 (92-183)||(27702274-27702364)
chr6 (92-179)||(27714041-27714127)
chr6 (92-203)||(26890165-26890275)
chr6 (129-202)||(31289417-31289490)
chr6 (92-181)||(26853741-26853829)
chr6 (95-216)||(26628099-26628219)
chr6 (95-216)||(26734076-26734196)
chr6 (92-168)||(26890566-26890641)
chr6 (122-202)||(26631560-26631641)
chr6 (132-181)||(26651232-26651281)
chr6 (122-202)||(26737535-26737616)
chr6 (132-181)||(26757200-26757249)
chr6 (145-216)||(26828453-26828524)
chr6 (121-181)||(27586671-27586731)
chr6 (121-181)||(27712634-27712694)
chr6 (142-181)||(26966226-26966265)
[»] chr8 (2 HSPs)
chr8 (92-200)||(29269934-29270041)
chr8 (31-84)||(26992284-26992337)
[»] chr7 (1 HSPs)
chr7 (9-54)||(45237102-45237147)
[»] chr2 (1 HSPs)
chr2 (1-74)||(35005822-35005895)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 18692374 - 18692476
Alignment:
Q  90 tctactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctgtgctacgagc 189  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||   |||||||    
T  18692374 tctactaagattgaaattctcaaaactct-ccaactgaggtgcaaagcatatcaatactcactgccctttcgaacaaccaacggattctgaagtacgagc 18692472  T
Q  190 gacc 193  Q
    ||||    
T  18692473 gacc 18692476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 5083269 - 5083209
Alignment:
Q  121 caactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctgtg 181  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||    
T  5083269 caactgagctgcaaagcatatcattactcactgccctttcaaacaatccacggattctgtg 5083209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 18674294 - 18674389
Alignment:
Q  90 tctactaagattgaaattctcaaaactcttccaactgagct---------gcaaagcatatcattactcactgccctttcgaacaaccaacggattc 177  Q
    ||||||||||||||||||||||||||||| |||||||||||         ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  18674294 tctactaagattgaaattctcaaaactct-ccaactgagctaactgaggtgcaaagcatatcaatactcactgccctttcgatcaaccaacggattc 18674389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 18718903 - 18718953
Alignment:
Q  121 caactgagctgcaaagcatatcattactcactgccctttcgaacaaccaac 171  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  18718903 caactgaggtgcaaagcatatcaatactcactgcccgttcgaacaaccaac 18718953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 18650691 - 18650746
Alignment:
Q  124 ctgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctg 179  Q
    ||||| |||||||||||||| |||||||| ||| ||||||||||||| ||||||||    
T  18650691 ctgaggtgcaaagcatatcaatactcacttcccgttcgaacaaccaatggattctg 18650746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 18683098 - 18683147
Alignment:
Q  121 caactgagctgcaaagcatatcattactcactgccctttcgaacaaccaa 170  Q
    |||||||| |||||||||||||| ||||||| ||||||| ||||||||||    
T  18683098 caactgaggtgcaaagcatatcaatactcacagcccttttgaacaaccaa 18683147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 17903 - 17817
Alignment:
Q  92 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctg 179  Q
    |||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17903 tactaagattgaaattctcaaagcact-ccaactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattctg 17817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 27702274 - 27702364
Alignment:
Q  92 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctgtgct 183  Q
    ||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27702274 tactaagatggaaattctcaaagcact-ccaactgagctgcaaagcatatcattactcactgtcctttcgaacaaccaacggattctgtgct 27702364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 27714041 - 27714127
Alignment:
Q  92 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctg 179  Q
    |||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27714041 tactaagattgaaattctcaaagcact-ccaactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattctg 27714127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 26890275 - 26890165
Alignment:
Q  92 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctgtgctacgagcga 191  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||| |||||||| |||||||||||| | ||| | |    
T  26890275 tactacgattgaaattctcataactcttc-aactgagctgcaaagcataccgttactcactgccctttagaacaaccgacggattctgtggtgcgaacaa 26890177  T
Q  192 ccgctagacatc 203  Q
    || |||||||||    
T  26890176 cctctagacatc 26890165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 31289490 - 31289417
Alignment:
Q  129 ctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctgtgctacgagcgaccgctagacat 202  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||    
T  31289490 ctgcaaagcatagcattactcactgccctttcgaacaaccaacggattctgtgctgcgagcaaccactagacat 31289417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 26853829 - 26853741
Alignment:
Q  92 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctgtg 181  Q
    |||||| |||||| ||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  26853829 tactaaaattgaatttctcaaaactctac-aactgggctgcaaagcatatcattactcactgccctttcgaacagccaacagattttgtg 26853741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 26628219 - 26628099
Alignment:
Q  95 taagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctgtgctacgagcgaccg 194  Q
    ||||||||||||||||||| | || ||||||||| || || ||||||||||||||||| ||| |||||||| |||||||||| |||  | | ||| |||     
T  26628219 taagattgaaattctcaaagcact-ccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggattttgttgtgcaagcaacct 26628121  T
Q  195 ctagacatcctgcataacaatg 216  Q
    ||||||||| ||||| ||||||    
T  26628120 ctagacatcttgcatgacaatg 26628099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 26734196 - 26734076
Alignment:
Q  95 taagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctgtgctacgagcgaccg 194  Q
    ||||||||||||||||||| | || ||||||||| || || ||||||||||||||||| ||| |||||||| |||||||||| |||  | | ||| |||     
T  26734196 taagattgaaattctcaaagcact-ccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggattttgttgtgcaagcaacct 26734098  T
Q  195 ctagacatcctgcataacaatg 216  Q
    ||||||||| ||||| ||||||    
T  26734097 ctagacatcttgcatgacaatg 26734076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 26890641 - 26890566
Alignment:
Q  92 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaacc 168  Q
    ||||| |||||||||||||| |||||||| || |||||||||||||||| | |||||||||||||||| ||||||||    
T  26890641 tactacgattgaaattctcataactcttcaaa-tgagctgcaaagcataccgttactcactgccctttagaacaacc 26890566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 26631641 - 26631560
Alignment:
Q  122 aactgagctgcaaagcatatcattactcactgccctttcgaacaa-ccaacggattctgtgctacgagcgaccgctagacat 202  Q
    ||||||||||| ||||||| |||||||||||||||||| ||||||   ||||||||||||||| ||||| ||| ||||||||    
T  26631641 aactgagctgcgaagcatagcattactcactgccctttggaacaagtaaacggattctgtgctgcgagcaacctctagacat 26631560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 26651281 - 26651232
Alignment:
Q  132 caaagcatatcattactcactgccctttcgaacaaccaacggattctgtg 181  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  26651281 caaagcatagcattactcactgccctttcgaacaaccaacagattctgtg 26651232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 26737616 - 26737535
Alignment:
Q  122 aactgagctgcaaagcatatcattactcactgccctttcgaacaa-ccaacggattctgtgctacgagcgaccgctagacat 202  Q
    ||||||||||| ||||||| |||||||||||||||||| ||||||   ||||||||||||||| ||||| ||| ||||||||    
T  26737616 aactgagctgcgaagcatagcattactcactgccctttggaacaagtaaacggattctgtgctgcgagcaacctctagacat 26737535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 26757249 - 26757200
Alignment:
Q  132 caaagcatatcattactcactgccctttcgaacaaccaacggattctgtg 181  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  26757249 caaagcatagcattactcactgccctttcgaacaaccaacagattctgtg 26757200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 26828524 - 26828453
Alignment:
Q  145 tactcactgccctttcgaacaaccaacggattctgtgctacgagcgaccgctagacatcctgcataacaatg 216  Q
    |||||| ||||||||||| |||| |||||||| |||| ||||||| ||| |||||||||| |||| ||||||    
T  26828524 tactcattgccctttcgagcaacaaacggattttgtggtacgagcaaccactagacatcccgcatgacaatg 26828453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 27586671 - 27586731
Alignment:
Q  121 caactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctgtg 181  Q
    |||||||  |||||||||||||||||||||||||| |||| ||||| | || |||||||||    
T  27586671 caactgaattgcaaagcatatcattactcactgccatttcaaacaagccacagattctgtg 27586731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 27712634 - 27712694
Alignment:
Q  121 caactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctgtg 181  Q
    |||||||  ||||||||||||||||||||| |||| |||| ||||| | ||||||||||||    
T  27712634 caactgaattgcaaagcatatcattactcagtgccatttcaaacaagccacggattctgtg 27712694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 26966265 - 26966226
Alignment:
Q  142 cattactcactgccctttcgaacaaccaacggattctgtg 181  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  26966265 cattattcgctgccctttcgaacaaccaacggattctgtg 26966226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 29269934 - 29270041
Alignment:
Q  92 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctgtgctacgagcga 191  Q
    ||||||||| ||||||| |||| | || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||  |||| |    
T  29269934 tactaagatggaaattcacaaagcact-ccaactgagctgcaaagcatatcattactcactgccctttcgaacaacaaacggattatgtgctgtgagcaa 29270032  T
Q  192 ccgctagac 200  Q
    || ||||||    
T  29270033 cctctagac 29270041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 26992337 - 26992284
Alignment:
Q  31 aataaaatttaattttcaaattcactcattcatcaagaaaactaacgcatcttc 84  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||||| |||||    
T  26992337 aataaaatttaattttcaaattcacatattcatccagaaaactaacgcctcttc 26992284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 45237147 - 45237102
Alignment:
Q  9 taaaataataaaactatcttcaaataaaatttaattttcaaattca 54  Q
    |||||| |||||| |||||| |||||||||||||||||||||||||    
T  45237147 taaaatgataaaattatctttaaataaaatttaattttcaaattca 45237102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35005822 - 35005895
Alignment:
Q  1 ttacatcctaaaataataaaactatcttcaaataaaatttaattttcaaattcactcattcatcaagaaaacta 74  Q
    ||||| |||||||| | |||  || ||| ||||||||| |||||||||||||||| |||||| | |||||||||    
T  35005822 ttacaccctaaaatcacaaatttacctttaaataaaatataattttcaaattcacccattcacccagaaaacta 35005895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University