View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10221_low_14 (Length: 213)
Name: NF10221_low_14
Description: NF10221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10221_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 14194627 - 14194442
Alignment:
| Q |
18 |
aaaacgatgttgaaaaccaaaatggatttaaggatatcaataacttatttttgttgtaacttgtaaattaatcctaagctgctgttttagatgatattga |
117 |
Q |
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| T |
14194627 |
aaaacgacgatgaaaaccaaaatggatttaaggatatcaatagcttatttttgttgtaacttgtaaattaatcctaagctgctgttttagatgatattga |
14194528 |
T |
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| Q |
118 |
cattctttcttttatgcgaattaagtctttgttttttcttgacatagttctgtttgatttgtacatcacgtatatacaacacaggt |
203 |
Q |
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| T |
14194527 |
cattctttcttttatgcaaattaagtgtttgttttttcttgacatagttctgtttggtttgtacatcacgtatatacaacacaggt |
14194442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 14181466 - 14181378
Alignment:
| Q |
18 |
aaaacgatgttgaaaaccaaaatggatttaaggatatcaataacttatttttgttgtaacttgtaaattaatcctaagctgctgtttta |
106 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
14181466 |
aaaatgatgatgaaaaccaaaatggatttaaggatatcaatagcttatttttattgtaacttgtaaattaatcataagctgctgtttta |
14181378 |
T |
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