View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10221_low_2 (Length: 335)
Name: NF10221_low_2
Description: NF10221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10221_low_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 27227520 - 27227195
Alignment:
| Q |
10 |
gcacagatggtaaaatcagttcataagctcaaataagtaaatccaaacaaaatcccataaaacacatcattcacaacactcagcaacagaaacactgata |
109 |
Q |
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| T |
27227520 |
gcacagatggtaaaatcagttcataagctcaaataagtaaatccaaacaaaatcccataaaacacatcattgacaacactcagcaacagaaacactgata |
27227421 |
T |
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| Q |
110 |
ataattaaaaatctaaacaaaaccacttgcaaattaaacactgataatagacccaaacgcaatttcattgaaccttaaccgttgaatcgacttctctcat |
209 |
Q |
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| T |
27227420 |
ataattaaaaatctaaacaaaaccacttgcaaattaaacactgataatagacccaaacgcaatttcattgaaccttaaccgttgaatcgacttctctcat |
27227321 |
T |
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| Q |
210 |
cagagactcgtcacacttcctcttgcttccttggaggacggcggcgccatcgtttcttctgctgggctatgagaagtgacttcattaaagtcaacttttt |
309 |
Q |
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| T |
27227320 |
cagagactcatcacacttcctcttgcttcgttgcaggatagcggcgccatcgtttcttctgctgggctatgagaagtgacttcattaaactcaactttat |
27227221 |
T |
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| Q |
310 |
aaattgacaaaaaattcaacattttt |
335 |
Q |
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| T |
27227220 |
aaattgacaaaaaagtcaacattttt |
27227195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 753154 - 753126
Alignment:
| Q |
31 |
cataagctcaaataagtaaatccaaacaa |
59 |
Q |
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| T |
753154 |
cataagctcaaataagtaaatccaaacaa |
753126 |
T |
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