View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10221_low_3 (Length: 333)

Name: NF10221_low_3
Description: NF10221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10221_low_3
NF10221_low_3
[»] chr3 (38 HSPs)
chr3 (5-325)||(12248345-12248646)
chr3 (5-310)||(23758314-23758600)
chr3 (1-216)||(13382165-13382381)
chr3 (1-216)||(13392759-13392975)
chr3 (1-216)||(4744847-4745062)
chr3 (1-216)||(5511803-5512018)
chr3 (1-216)||(5546517-5546732)
chr3 (1-216)||(16477388-16477603)
chr3 (1-221)||(5626873-5627093)
chr3 (1-221)||(12295716-12295936)
chr3 (1-221)||(41684778-41684998)
chr3 (1-216)||(5875158-5875373)
chr3 (1-221)||(24661019-24661239)
chr3 (1-168)||(9992806-9992973)
chr3 (1-221)||(24392968-24393189)
chr3 (1-168)||(6499876-6500043)
chr3 (1-325)||(38195790-38196095)
chr3 (1-222)||(8775808-8776028)
chr3 (1-222)||(18485141-18485361)
chr3 (1-222)||(39373205-39373425)
chr3 (1-222)||(28323713-28323933)
chr3 (1-162)||(16390437-16390598)
chr3 (1-161)||(6219550-6219710)
chr3 (1-162)||(19779600-19779761)
chr3 (1-163)||(37867664-37867826)
chr3 (1-163)||(37876182-37876344)
chr3 (1-159)||(20682629-20682787)
chr3 (79-211)||(10654248-10654379)
chr3 (1-159)||(14466815-14466973)
chr3 (1-164)||(29470680-29470843)
chr3 (5-83)||(10635936-10636014)
chr3 (1-159)||(13122889-13123047)
chr3 (237-315)||(10654384-10654462)
chr3 (242-325)||(28323934-28324019)
chr3 (242-325)||(39373119-39373204)
chr3 (248-316)||(6500112-6500180)
chr3 (244-316)||(9993040-9993112)
chr3 (285-316)||(37876014-37876045)
[»] chr2 (18 HSPs)
chr2 (5-325)||(9907076-9907377)
chr2 (1-216)||(40223424-40223639)
chr2 (5-220)||(9772247-9772465)
chr2 (1-216)||(43346490-43346705)
chr2 (19-216)||(34803301-34803498)
chr2 (1-221)||(10268068-10268288)
chr2 (1-221)||(10278645-10278865)
chr2 (1-216)||(11404357-11404576)
chr2 (1-222)||(35254119-35254339)
chr2 (1-222)||(35264728-35264948)
chr2 (1-325)||(27222421-27222726)
chr2 (1-161)||(24337276-24337436)
chr2 (1-163)||(29245393-29245555)
chr2 (1-163)||(43083835-43083997)
chr2 (1-158)||(4211085-4211242)
chr2 (1-159)||(22959215-22959373)
chr2 (242-325)||(35254033-35254118)
chr2 (242-325)||(35264642-35264727)
[»] chr4 (17 HSPs)
chr4 (5-220)||(451697-451912)
chr4 (5-220)||(30935995-30936210)
chr4 (5-220)||(21997537-21997752)
chr4 (1-216)||(55754728-55754943)
chr4 (1-221)||(36019455-36019675)
chr4 (1-221)||(10750068-10750288)
chr4 (1-221)||(10963837-10964057)
chr4 (1-222)||(24641435-24641655)
chr4 (1-325)||(18761981-18762285)
chr4 (1-222)||(27657768-27657988)
chr4 (1-163)||(24026938-24027100)
chr4 (1-161)||(17919294-17919454)
chr4 (1-163)||(19953855-19954017)
chr4 (3-163)||(40469494-40469654)
chr4 (1-159)||(16257112-16257270)
chr4 (242-325)||(27657682-27657767)
chr4 (242-325)||(24641349-24641434)
[»] chr1 (22 HSPs)
chr1 (5-220)||(12731576-12731791)
chr1 (5-220)||(12742169-12742384)
chr1 (1-216)||(38096156-38096371)
chr1 (1-221)||(7508365-7508585)
chr1 (1-221)||(36245943-36246163)
chr1 (1-221)||(51655387-51655607)
chr1 (1-222)||(35400055-35400275)
chr1 (1-222)||(35647580-35647800)
chr1 (1-222)||(47617449-47617668)
chr1 (1-222)||(5834292-5834512)
chr1 (1-222)||(3172688-3172908)
chr1 (1-163)||(4168401-4168563)
chr1 (1-163)||(19180085-19180247)
chr1 (1-161)||(5649269-5649429)
chr1 (1-161)||(21864824-21864984)
chr1 (1-164)||(153163-153326)
chr1 (1-159)||(12622689-12622847)
chr1 (242-325)||(3172601-3172687)
chr1 (242-325)||(35400276-35400361)
chr1 (242-325)||(35647801-35647886)
chr1 (274-325)||(5834228-5834278)
chr1 (284-325)||(47617693-47617734)
[»] chr7 (28 HSPs)
chr7 (5-325)||(466557-466857)
chr7 (5-216)||(2715201-2715412)
chr7 (1-216)||(8011647-8011862)
chr7 (1-216)||(9086365-9086580)
chr7 (1-221)||(40051664-40051884)
chr7 (1-216)||(26698689-26698904)
chr7 (1-222)||(1988671-1988891)
chr7 (1-216)||(26399656-26399871)
chr7 (1-221)||(24735856-24736076)
chr7 (1-216)||(11097145-11097364)
chr7 (1-222)||(11006320-11006540)
chr7 (1-222)||(42866961-42867181)
chr7 (1-164)||(21001968-21002131)
chr7 (1-163)||(5686723-5686885)
chr7 (1-163)||(9434427-9434589)
chr7 (1-163)||(6876803-6876965)
chr7 (1-168)||(19992976-19993143)
chr7 (1-161)||(22090372-22090532)
chr7 (1-159)||(4213219-4213377)
chr7 (1-159)||(17959635-17959793)
chr7 (1-157)||(8618587-8618743)
chr7 (1-159)||(168090-168248)
chr7 (242-325)||(11006233-11006319)
chr7 (1-160)||(15887206-15887365)
chr7 (284-325)||(1988605-1988646)
chr7 (284-325)||(42866895-42866936)
chr7 (285-317)||(9434279-9434311)
chr7 (285-317)||(21002246-21002278)
[»] chr5 (38 HSPs)
chr5 (5-220)||(15994334-15994549)
chr5 (5-220)||(31843003-31843218)
chr5 (1-216)||(15768374-15768589)
chr5 (1-216)||(37731007-37731222)
chr5 (1-216)||(17616653-17616868)
chr5 (1-216)||(17728510-17728725)
chr5 (1-216)||(23371543-23371758)
chr5 (1-216)||(23706390-23706605)
chr5 (1-216)||(30228501-30228716)
chr5 (1-216)||(31358127-31358342)
chr5 (1-216)||(36583554-36583769)
chr5 (1-216)||(42052402-42052617)
chr5 (1-216)||(9345574-9345789)
chr5 (1-216)||(24589109-24589324)
chr5 (1-221)||(24817891-24818111)
chr5 (1-216)||(14559113-14559328)
chr5 (1-221)||(6985332-6985552)
chr5 (1-221)||(14039631-14039851)
chr5 (1-221)||(22685037-22685257)
chr5 (1-221)||(23305880-23306100)
chr5 (1-221)||(27469595-27469815)
chr5 (1-212)||(14448085-14448296)
chr5 (1-216)||(27043264-27043479)
chr5 (1-221)||(39491937-39492157)
chr5 (1-222)||(35225096-35225316)
chr5 (1-166)||(31447518-31447683)
chr5 (1-163)||(5291675-5291837)
chr5 (1-163)||(27604554-27604716)
chr5 (1-161)||(40400001-40400161)
chr5 (1-162)||(39361282-39361443)
chr5 (1-159)||(22156086-22156244)
chr5 (75-220)||(36697303-36697447)
chr5 (18-164)||(1110295-1110441)
chr5 (1-164)||(20796655-20796818)
chr5 (1-64)||(36697208-36697271)
chr5 (241-325)||(36697449-36697535)
chr5 (274-325)||(35225330-35225380)
chr5 (285-317)||(23371828-23371860)
[»] chr6 (30 HSPs)
chr6 (1-216)||(12856046-12856261)
chr6 (1-216)||(26865889-26866104)
chr6 (1-216)||(3662441-3662656)
chr6 (1-216)||(25788825-25789040)
chr6 (1-221)||(27342819-27343039)
chr6 (1-221)||(27403559-27403779)
chr6 (1-221)||(16931486-16931706)
chr6 (1-216)||(12726329-12726544)
chr6 (1-216)||(17983630-17983849)
chr6 (1-221)||(26026511-26026731)
chr6 (1-164)||(9122025-9122188)
chr6 (1-168)||(27373928-27374095)
chr6 (1-168)||(27464281-27464448)
chr6 (1-163)||(25590360-25590522)
chr6 (75-220)||(27385509-27385653)
chr6 (75-220)||(27475922-27476066)
chr6 (1-159)||(34816667-34816825)
chr6 (75-220)||(4631983-4632127)
chr6 (75-220)||(32310650-32310794)
chr6 (1-157)||(32971370-32971526)
chr6 (72-163)||(7669375-7669466)
chr6 (1-103)||(27385646-27385748)
chr6 (1-103)||(27476059-27476161)
chr6 (1-103)||(4632120-4632222)
chr6 (1-160)||(12359298-12359457)
chr6 (1-64)||(32310555-32310618)
chr6 (241-325)||(4631895-4631981)
chr6 (241-325)||(32310796-32310882)
chr6 (241-325)||(27385421-27385507)
chr6 (241-325)||(27475834-27475920)
[»] chr8 (23 HSPs)
chr8 (1-216)||(209099-209314)
chr8 (1-216)||(722722-722937)
chr8 (1-216)||(29077839-29078054)
chr8 (1-216)||(32087215-32087430)
chr8 (1-216)||(15766093-15766311)
chr8 (1-216)||(15790230-15790448)
chr8 (1-216)||(242942-243156)
chr8 (1-216)||(796312-796526)
chr8 (1-216)||(36294058-36294273)
chr8 (1-221)||(3358151-3358371)
chr8 (1-221)||(9342258-9342478)
chr8 (1-222)||(13687510-13687730)
chr8 (1-222)||(36079058-36079278)
chr8 (1-163)||(26112468-26112630)
chr8 (1-163)||(19129938-19130100)
chr8 (1-159)||(6152292-6152450)
chr8 (75-220)||(44482252-44482396)
chr8 (1-103)||(44482389-44482491)
chr8 (1-160)||(19226134-19226293)
chr8 (1-160)||(30324174-30324333)
chr8 (242-325)||(13687731-13687816)
chr8 (241-325)||(44482164-44482250)
chr8 (284-325)||(36078992-36079033)
[»] scaffold0133 (1 HSPs)
scaffold0133 (1-216)||(32262-32477)
[»] scaffold0906 (1 HSPs)
scaffold0906 (3-326)||(3438-3749)
[»] scaffold0105 (1 HSPs)
scaffold0105 (1-325)||(46494-46799)
[»] scaffold1216 (1 HSPs)
scaffold1216 (1-163)||(267-429)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-164)||(52486-52649)
[»] scaffold0454 (3 HSPs)
scaffold0454 (75-220)||(2391-2535)
scaffold0454 (1-103)||(2528-2630)
scaffold0454 (231-325)||(2303-2399)
[»] scaffold0199 (2 HSPs)
scaffold0199 (75-180)||(23787-23892)
scaffold0199 (241-311)||(23666-23737)
[»] scaffold0398 (2 HSPs)
scaffold0398 (1-164)||(3253-3416)
scaffold0398 (86-164)||(11593-11671)
[»] scaffold0747 (1 HSPs)
scaffold0747 (1-53)||(3567-3619)
[»] scaffold1002 (2 HSPs)
scaffold1002 (75-164)||(2863-2952)
scaffold1002 (1-103)||(2768-2870)
[»] scaffold0251 (1 HSPs)
scaffold0251 (86-160)||(23758-23832)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 5 - 325
Target Start/End: Original strand, 12248345 - 12248646
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgat 104  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||    
T  12248345 ctatccagaagaagaatacatcacaagggctgctagaattcatgctgggcataaaaggaaattaagggaaaaggatgagctacttcagaagaaggatgat 12248444  T
Q  105 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatc 204  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12248445 cagatcaagcatctcttagaacagttgtttaagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatc 12248544  T
Q  205 tttgtatcttaaccttcaattggtatcttaaccttcctttataaatattatcattgtttttaaatcatgtgttctattcttttaactctgatgatattta 304  Q
    |||||||||                   ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  12248545 tttgtatct-------------------taacctttctttataaatattatcattgtttttaaatcatatgttctatacttttaattctgatgatattta 12248625  T
Q  305 ttgtttttaatgtcctatgct 325  Q
    |||||||||||||| ||||||    
T  12248626 ttgtttttaatgtcttatgct 12248646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 310
Target Start/End: Complemental strand, 23758600 - 23758314
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||    
T  23758600 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaattaagggaaaaggatgagctacttcagaagaaggatgat 23758501  T
Q  105 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  23758500 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactaacttgttttttacttttgttcttagtagctttgtc 23758401  T
Q  205 tttgtatcttaaccttcaattggtatcttaaccttcctttataaatattatcattgtttttaaatcatgtgttctattcttttaactctgatgatattta 304  Q
    |||||||||||||||| |                   |||||||||||||||||||||| |||||||| |||||||| ||||||| |||||| |||||||    
T  23758400 tttgtatcttaaccttta-------------------tttataaatattatcattgtttataaatcatatgttctatacttttaattctgataatattta 23758320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 13382165 - 13382381
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| |||||| ||||||| | |||||| |||||||||||||||||||||||||||||    
T  13382165 ctttctatccagaggaagagtacatcacaagggctgctagaattcaggctgggtataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 13382264  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg-ttttttacttttgttcttagtagct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13382265 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgtttttttacttttgttcttagtagct 13382364  T
Q  200 ttatctttgtatcttaa 216  Q
    || ||||||||||||||    
T  13382365 ttgtctttgtatcttaa 13382381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 13392759 - 13392975
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| |||||| ||||||| | |||||| |||||||||||||||||||||||||||||    
T  13392759 ctttctatccagaggaagagtacatcacaagggctgctagaattcaggctgggtataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 13392858  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg-ttttttacttttgttcttagtagct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13392859 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgtttttttacttttgttcttagtagct 13392958  T
Q  200 ttatctttgtatcttaa 216  Q
    || ||||||||||||||    
T  13392959 ttgtctttgtatcttaa 13392975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 4745062 - 4744847
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  4745062 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 4744963  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  4744962 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 4744863  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  4744862 tgtctttgtatcttaa 4744847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 5512018 - 5511803
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  5512018 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 5511919  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  5511918 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 5511819  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  5511818 tgtctttgtatcttaa 5511803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 5546517 - 5546732
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  5546517 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 5546616  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  5546617 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 5546716  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  5546717 tgtctttgtatcttaa 5546732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 16477603 - 16477388
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||| | | |||||| |||||||||||||||||||||||||||||    
T  16477603 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaacgaagaatgagggaaaaggatgagctacttcagaagaagga 16477504  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  16477503 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 16477404  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  16477403 tgtctttgtatcttaa 16477388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5626873 - 5627093
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||| | | |||||| |||||||||||||||||||||||||||||    
T  5626873 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaacgaagaatgagggaaaaggatgagctacttcagaagaagga 5626972  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  5626973 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 5627072  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  5627073 tgtccttgtatcttaatcttc 5627093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12295716 - 12295936
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||| | | |||||| |||||||||||||||||||||||||||||    
T  12295716 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaacgaagaatgagggaaaaggatgagctacttcagaagaagga 12295815  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  12295816 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 12295915  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  12295916 tgtccttgtatcttaatcttc 12295936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41684998 - 41684778
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||| | | |||||| |||||||||||||||||||||||||||||    
T  41684998 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaacgaagaatgagggaaaaggatgagctacttcagaagaagga 41684899  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  41684898 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 41684799  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  41684798 tgtccttgtatcttaatcttc 41684778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 5875158 - 5875373
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   ||||   | |||||| |||||||||||||||||||||||||||||    
T  5875158 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacaaagaatgagggaaaaggatgagctacttcagaagaagga 5875257  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  5875258 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 5875357  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  5875358 tgtctttgtatcttaa 5875373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 24661239 - 24661019
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  24661239 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 24661140  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  24661139 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 24661040  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  24661039 tgtccttgtatcttaatcttc 24661019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 9992806 - 9992973
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||    
T  9992806 ctttctatcccgaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaagaagaatgagagaaaaggatgagctacttaagaagaagga 9992905  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacact 168  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9992906 tgatcatatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacact 9992973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24392968 - 24393189
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||| ||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  24392968 ctttctattcagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 24393067  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg-ttttttacttttgttcttagtagct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  24393068 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgtttttttacttttgttcttcgtagct 24393167  T
Q  200 ttatctttgtatcttaaccttc 221  Q
     | || ||||||||||| ||||    
T  24393168 gtgtccttgtatcttaatcttc 24393189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 6499876 - 6500043
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||    
T  6499876 ctttctatcaagaagaagagtacatcacaagggctgcaagaattcatgctgggcttaaaagaagaatgagagaaaaggatgagctacttcagaagaagga 6499975  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacact 168  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  6499976 tgatcagatcaagtatcttttggaacagttgtataagcaagcccaaccttagttgcacacccaacact 6500043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 38196095 - 38195790
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  38196095 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 38195996  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  38195995 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 38195897  T
Q  201 tatctttgtatcttaaccttcaattggtatcttaaccttcctttataaatattatcattgttt-ttaaatcatgtgttctattcttttaactctgatgat 299  Q
    |||||||||| |||||||||||                   |||||||||||||||||||||| | ||||  | ||||||||| |||||||||| |||||    
T  38195896 tatctttgtaccttaaccttca-------------------tttataaatattatcattgtttctgaaatattatgttctatttttttaactctaatgat 38195816  T
Q  300 atttattgtttttaatgtcctatgct 325  Q
    |||||||| |||||||||| ||||||    
T  38195815 atttattgattttaatgtcatatgct 38195790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8776028 - 8775808
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  8776028 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 8775929  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  8775928 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 8775830  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  8775829 tatctttgtaccttaaccttca 8775808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 18485361 - 18485141
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  18485361 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 18485262  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  18485261 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 18485163  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  18485162 tatctttgtaccttaaccttca 18485141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39373425 - 39373205
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  39373425 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 39373326  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  39373325 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 39373227  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  39373226 tatctttgtaccttaaccttca 39373205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28323713 - 28323933
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  28323713 ctttctatcctgaagaagagtatatctcaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 28323812  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||  |    
T  28323813 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttg-tttttacttttgttctgtgtagtct 28323911  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  28323912 tatctttgtaccttaaccttca 28323933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 16390437 - 16390598
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||  |||||| | ||||||||||||||||||||||||||||||||||||    
T  16390437 ctttctatccagaagaagagtacatcacaagggcagccagaattcatgctgggtttaaaagaagaatgagagaaaaggatgagctacttcagaagaagga 16390536  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccc 162  Q
    ||| || || ||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  16390537 tgagcaaattaagtatctcttggaacagatgtataagcaagcccaaccttagttgcacaccc 16390598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 6219550 - 6219710
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| || |||||||    
T  6219550 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggtataaaagaagaatgagagaaaaggatgagctacttaagcagaagga 6219649  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacc 161  Q
    ||| || || ||||||||||| |||||| |||| |||||||||||||||||||||||||||    
T  6219650 tgaacaaattaagtatctcttggaacagatgtacaagcaagcccaaccttagttgcacacc 6219710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 19779761 - 19779600
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||    
T  19779761 ctttctatccagaagaagagtacatcataagggctgcaagaattcatgctgggtataaaagaagaatgagagaaaaggatgagctacttaagaagaagga 19779662  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccc 162  Q
    ||| || || |||||||| || |||||| |||| ||||||||||||||||||||||||||||    
T  19779661 tgagcaaattaagtatcttttggaacagatgtacaagcaagcccaaccttagttgcacaccc 19779600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 37867826 - 37867664
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||| ||||||||||    
T  37867826 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggtttaaaagaagaatgagagaaaaggatgagctacttaagaagaagga 37867727  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || |||||||| || ||| || |||| |||||||||||||||||||||||||||||    
T  37867726 tgagcaaattaagtatcttttggaatagatgtacaagcaagcccaaccttagttgcacaccca 37867664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 37876344 - 37876182
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||| ||||||||||    
T  37876344 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggtttaaaagaagaatgagagaaaaggatgagctacttaagaagaagga 37876245  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || |||||||| || ||| || |||| |||||||||||||||||||||||||||||    
T  37876244 tgagcaaattaagtatcttttggaatagatgtacaagcaagcccaaccttagttgcacaccca 37876182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 20682629 - 20682787
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||||| | |||||| |||||||||||||||||  ||||||||||    
T  20682629 ctttctatacagaagaagagtacatcacaagggcatcaagaattcatgctgggtataaaagaagaatgagggaaaaggatgagctactcaagaagaagga 20682728  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcaca 159  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||||    
T  20682729 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcaca 20682787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 10654248 - 10654379
Alignment:
Q  79 atgagctacttcagaagaaggatgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgtttt 178  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  10654248 atgagctacttcagaagaaagatgatcaaatcaagtatctcttagaatagttgtataagcaagcccaaccttagttgcacacccaactctagcttg-ttt 10654346  T
Q  179 ttacttttgttcttagtagctttatctttgtat 211  Q
    |||||||||||||  ||||||||  ||||||||    
T  10654347 ttacttttgttctctgtagctttgcctttgtat 10654379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 14466973 - 14466815
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||| | ||||| | | |||| |||||||||||||||||  | ||||||||    
T  14466973 ctttctatccagaagaagagtacatctcaagggcaacaagaattcatgctgggtacaaaagaagattgagggaaaaggatgagctactcaaaaagaagga 14466874  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcaca 159  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||||    
T  14466873 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcaca 14466815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 29470680 - 29470843
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||| ||| ||||  ||||| |||| |||||||||||||||   ||||| | | |||||| ||||||||| | |||||||||||||||    
T  29470680 ctttctatccagaagatgaggacatttcaaggactgctagaattcatgctgggttgaaaagtagactgagagcaaaggatgaacaacttcagaagaagga 29470779  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaa 164  Q
    ||| || || |||||||| || ||||||||||||||||||||| ||||||||||||||||||||    
T  29470780 tgagcaaattaagtatctattggaacagttgtataagcaagccaaaccttagttgcacacccaa 29470843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 10635936 - 10636014
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgag 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10635936 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgag 10636014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 13123047 - 13122889
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||| ||||| | ||||| | | |||| |||||||||||||||||  | ||||||||    
T  13123047 ctttctatccagaagaagagtacatctcaagggcaacaagaattcattctgggtacaaaagaagattgagggaaaaggatgagctactcaaaaagaagga 13122948  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcaca 159  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||||    
T  13122947 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcaca 13122889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 10654384 - 10654462
Alignment:
Q  237 cttcctttataaatattatcattgtttttaaatcatgtgttctattcttttaactctgatgatatttattgtttttaat 315  Q
    ||| |||||||||||| |||||||||| |||||||| |||||||| ||||||| |||||| ||||||| ||||||||||    
T  10654384 ctttctttataaatatcatcattgtttataaatcatatgttctatacttttaattctgataatatttactgtttttaat 10654462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 28323934 - 28324019
Alignment:
Q  242 tttataaatattatcattgttttt-aaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||||||||||||||| | ||||  | ||||||||| |||| |||||| ||||||||||||| |||||||||| ||||||    
T  28323934 tttataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatgtcatatgct 28324019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 39373204 - 39373119
Alignment:
Q  242 tttataaatattatcattgttttt-aaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||||||||||||||| | ||||  | ||||||||| |||| |||||| ||||||||||||| |||||||||| ||||||    
T  39373204 tttataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatgtcatatgct 39373119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 6500112 - 6500180
Alignment:
Q  248 aatattatcattgtttttaaatcatgtgttctattcttttaactctgatgatatttattgtttttaatg 316  Q
    |||||||||||||||| | ||  || |||||||   |||||||||||||||| ||||||||||||||||    
T  6500112 aatattatcattgtttctgaaaaatatgttctacagttttaactctgatgatgtttattgtttttaatg 6500180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 9993040 - 9993112
Alignment:
Q  244 tataaatattatcattgtttttaaatcatgtgttctattcttttaactctgatgatatttattgtttttaatg 316  Q
    |||||||||||||||| ||| | ||  || |||||||   |||||||||| ||||||||||||||||||||||    
T  9993040 tataaatattatcattatttctgaaaaatatgttctacagttttaactctaatgatatttattgtttttaatg 9993112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 285 - 316
Target Start/End: Complemental strand, 37876045 - 37876014
Alignment:
Q  285 tttaactctgatgatatttattgtttttaatg 316  Q
    ||||||||||||||||||||||||||||||||    
T  37876045 tttaactctgatgatatttattgtttttaatg 37876014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 5 - 325
Target Start/End: Original strand, 9907076 - 9907377
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||    
T  9907076 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaattaagggaaaaggatgagctacttcagaagaaggatgat 9907175  T
Q  105 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatc 204  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9907176 cagatcaagtatctcttagaacagttgtataagtaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttgtc 9907275  T
Q  205 tttgtatcttaaccttcaattggtatcttaaccttcctttataaatattatcattgtttttaaatcatgtgttctattcttttaactctgatgatattta 304  Q
    |||||||||                   ||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||| |||||| |||||||    
T  9907276 tttgtatct-------------------taacctttctttataaatattatcattgtttataaatcatatgttctatacttttaattctgataatattta 9907356  T
Q  305 ttgtttttaatgtcctatgct 325  Q
    |||||||||||||| ||||||    
T  9907357 ttgtttttaatgtcttatgct 9907377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 40223639 - 40223424
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| | |||||| |||||||||||||||||||||||||||||    
T  40223639 ctttctatccagaagaagagtacatcacaagggctgctagaattcaggctgggtataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 40223540  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40223539 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 40223440  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  40223439 tgtctttgtatcttaa 40223424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 9772247 - 9772465
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgat 104  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||    
T  9772247 ctatccagaagaagagtacatcacaagagctgcaagaattcatgctgggcataaaaggaaattaagggaaaaggatgagctacttcagaagaaagatgat 9772346  T
Q  105 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg---ttttttacttttgttcttagtagcttt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| ||||||||    
T  9772347 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgtttttttttacttttgttcttcgtagcttt 9772446  T
Q  202 atctttgtatcttaacctt 220  Q
     ||||||||||||||||||    
T  9772447 gtctttgtatcttaacctt 9772465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 43346705 - 43346490
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  43346705 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 43346606  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  43346605 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 43346506  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  43346505 tgtctttgtatcttaa 43346490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 34803301 - 34803498
Alignment:
Q  19 agtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgatcagatcaagtatct 118  Q
    ||||||||||||||| ||| |||||||| |||||| ||||||| | |||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  34803301 agtacatcacaagggttgctagaattcaggctgggtataaaagaagaatgagggaaaaggatgaactacttcagaagaaggatgatcagatcaagtatct 34803400  T
Q  119 cttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatctttgtatcttaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34803401 cttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttgtctttgtatcttaa 34803498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10268288 - 10268068
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||| | | |||||| ||||||||||||||||||||||| |||||    
T  10268288 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaacgaagaatgagggaaaaggatgagctacttcagaaaaagga 10268189  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  10268188 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 10268089  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  10268088 tgtccttgtatcttaatcttc 10268068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10278865 - 10278645
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||| | | |||||| ||||||||||||||||||||||| |||||    
T  10278865 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaacgaagaatgagggaaaaggatgagctacttcagaaaaagga 10278766  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  10278765 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 10278666  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  10278665 tgtccttgtatcttaatcttc 10278645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 11404357 - 11404576
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  11404357 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 11404456  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg----ttttttacttttgttcttagta 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    ||||||||||||||||||||||    
T  11404457 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttttttacttttgttcttagta 11404556  T
Q  197 gctttatctttgtatcttaa 216  Q
    ||| | ||||||||||||||    
T  11404557 gctgtgtctttgtatcttaa 11404576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35254339 - 35254119
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  35254339 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 35254240  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  35254239 tgaacagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 35254141  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  35254140 tatctttgtaccttaaccttca 35254119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35264948 - 35264728
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  35264948 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 35264849  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  35264848 tgaacagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 35264750  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  35264749 tatctttgtaccttaaccttca 35264728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 27222726 - 27222421
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  27222726 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 27222627  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  27222626 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 27222528  T
Q  201 tatctttgtatcttaaccttcaattggtatcttaaccttcctttataaatattatcattgttt-ttaaatcatgtgttctattcttttaactctgatgat 299  Q
    |||||||||| |||||||||||                   |||||||||||||||||||||| | ||||  | ||||||||| |||||||||| |||||    
T  27222527 tatctttgtaccttaaccttca-------------------tttataaatattatcattgtttctgaaatattatgttctatttttttaactctaatgat 27222447  T
Q  300 atttattgtttttaatgtcctatgct 325  Q
    |||||||| |||||||||| ||||||    
T  27222446 atttattgattttaatgtcatatgct 27222421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 24337276 - 24337436
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||  ||||||||||    
T  24337276 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggtataaaagaagaatgagagaaaaggatgagctactcaagaagaagga 24337375  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacc 161  Q
    ||| || || |||||||| || |||||| |||| |||||||||||||||||||||||||||    
T  24337376 tgagcaaattaagtatcttttggaacagatgtacaagcaagcccaaccttagttgcacacc 24337436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 29245555 - 29245393
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||| ||||||||||    
T  29245555 ctttctatccagaagaagagtacattacaagggctgcaagaattcatgctgggtttaaaagaagaatgagagaaaaggatgagctacttaagaagaagga 29245456  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || |||||||| || |||||| |||| |||||||||||||||||||||||||||||    
T  29245455 tgagcaaattaagtatcttttggaacagatgtacaagcaagcccaaccttagttgcacaccca 29245393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 43083997 - 43083835
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||| | ||||||||||||||||||||||||| ||||||||||    
T  43083997 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgttgggtttaaaagaagaatgagagaaaaggatgagctacttaagaagaagga 43083898  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || |||||||| || |||||| |||| |||||||||||||||||||||||||||||    
T  43083897 tgagcaaattaagtatcttttggaacagatgtacaagcaagcccaaccttagttgcacaccca 43083835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 4211242 - 4211085
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||  | ||||| | ||||||||||||||||||||||||  | ||||||||    
T  4211242 ctttctatccagaagaagagtacatctcaagggcaacaagaattcatgctggatacaaaagaagaatgagagaaaaggatgagctactcaaaaagaagga 4211143  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcac 158  Q
    ||| || ||||||||||| || |||||| |||| |||||| |||||||||||||||||    
T  4211142 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcac 4211085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 22959215 - 22959373
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||| | ||||| | | |||| ||||| |||||||||||  | ||||||||    
T  22959215 ctttctatccagaagaagagtacatctcaagggcaacaagaattcatgctgggtacaaaagaagattgagggaaaaagatgagctactcaaaaagaagga 22959314  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcaca 159  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||||    
T  22959315 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcaca 22959373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 35254118 - 35254033
Alignment:
Q  242 tttataaatattatcattgttttt-aaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||||||||||||||| | ||||  | ||||||||| |||| |||||| ||||||||||||| |||||||||| ||||||    
T  35254118 tttataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatgtcatatgct 35254033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 35264727 - 35264642
Alignment:
Q  242 tttataaatattatcattgttttt-aaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||||||||||||||| | ||||  | ||||||||| |||| |||||| ||||||||||||| |||||||||| ||||||    
T  35264727 tttataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatgtcatatgct 35264642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 451912 - 451697
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||    
T  451912 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaattaagggaaaaggatgagctacttcagaagaaagatgat 451813  T
Q  105 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  451812 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttgtc 451713  T
Q  205 tttgtatcttaacctt 220  Q
    ||||||||||||||||    
T  451712 tttgtatcttaacctt 451697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 30935995 - 30936210
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||    
T  30935995 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaattaagggaaaaggatgagctacttcagaagaaagatgat 30936094  T
Q  105 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30936095 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttgtc 30936194  T
Q  205 tttgtatcttaacctt 220  Q
    ||||||||||||||||    
T  30936195 tttgtatcttaacctt 30936210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 21997752 - 21997537
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || |||||||||||||||||||||||||| ||||||    
T  21997752 ctatccagaagaagagtacatcacaagggctgcaagaattcatgttgggcataaaaggaaattaagggaaaaggatgagctacttcagaagaaagatgat 21997653  T
Q  105 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21997652 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttgtc 21997553  T
Q  205 tttgtatcttaacctt 220  Q
    ||||||||||||||||    
T  21997552 tttgtatcttaacctt 21997537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 55754728 - 55754943
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | ||||||||||||||||||||||||||||||||||||    
T  55754728 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagagaaaaggatgagctacttcagaagaagga 55754827  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  55754828 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 55754927  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  55754928 tgtctttgtatcttaa 55754943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36019675 - 36019455
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||| | | |||||| |||||||||||||||||||||||||||||    
T  36019675 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaacgaagaatgagggaaaaggatgagctacttcagaagaagga 36019576  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  36019575 tgatcagatcaagtatctcttagaacaattgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 36019476  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  36019475 tgtccttgtatcttaatcttc 36019455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10750068 - 10750288
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  10750068 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 10750167  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  10750168 tgatcagatcaagtatctcttagaacagttgtctaagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 10750267  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  10750268 tgtccttgtatcttaatcttc 10750288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10963837 - 10964057
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  10963837 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 10963936  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  10963937 tgatcagatcaagtatctcttagaacagttgtctaagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 10964036  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  10964037 tgtccttgtatcttaatcttc 10964057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24641655 - 24641435
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  24641655 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 24641556  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  24641555 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 24641457  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  24641456 tatctttgtaccttaaccttca 24641435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 18761981 - 18762285
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||| || ||||||||| ||||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  18761981 ctttctatccagaagaggaatacatcacatgggctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 18762080  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||  |||| ||    
T  18762081 tgaacaaatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttg-tttttactcttgttctgtgtagttt 18762179  T
Q  201 tatctttgtatcttaaccttcaattggtatcttaaccttcctttataaatattatcattgttt-ttaaatcatgtgttctattcttttaactctgatgat 299  Q
    |||||||||| |||||||||                    | ||||||||||||||||||||| | ||||  | || ||||||||||||||||| |||||    
T  18762180 tatctttgtaccttaacctt--------------------ccttataaatattatcattgtttctgaaatattatgctctattcttttaactctaatgat 18762259  T
Q  300 atttattgtttttaatgtcctatgct 325  Q
    ||||||||||||||||||||||||||    
T  18762260 atttattgtttttaatgtcctatgct 18762285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27657988 - 27657768
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||  ||| | |||||| |||||||||||||||||| | ||||| ||    
T  27657988 ctttctatcctgaagaagagtatatcacaagagctgcaaggattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaaaaagaaaga 27657889  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  27657888 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 27657790  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  27657789 tatctttgtaccttaaccttca 27657768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 24026938 - 24027100
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||||  ||||||||||    
T  24026938 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggtataaaagaagaatgagggaaaaggatgagctactcaagaagaagga 24027037  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || ||||||||||| || |||||| |||| |||||||||||||||||||||||||||||    
T  24027038 tgagcaaatcaagtatcttttggaacagatgtacaagcaagcccaaccttagttgcacaccca 24027100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 17919454 - 17919294
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||||  ||||||||||    
T  17919454 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggtataaaagaagaatgagggaaaaggatgagctactcaagaagaagga 17919355  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacc 161  Q
    ||| || ||||||||||| || |||||| |||| ||| |||||||||||||||||||||||    
T  17919354 tgagcaaatcaagtatcttttggaacagatgtacaagaaagcccaaccttagttgcacacc 17919294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 19953855 - 19954017
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | ||| || |||||||||||||||||  ||||||||||    
T  19953855 ctttctacccagaagaatagtacatcacaagggctgcaagaattcatgctgggtataaaagaagaataagggaaaaggatgagctactcaagaagaagga 19953954  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || |||||||| || |||||| |||| ||||||| |||||||||||||||||||||    
T  19953955 tgagcaaattaagtatcttttggaacagatgtacaagcaagtccaaccttagttgcacaccca 19954017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 40469494 - 40469654
Alignment:
Q  3 ttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatg 102  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||||||||||   |||||| | ||||||||||||||||||||||||||||||||||||||    
T  40469494 ttctatctagaagaagagtacattacaagggctgctagaattcatgctggatttaaaagaagaatgagagaaaaggatgagctacttcagaagaaggatg 40469593  T
Q  103 atcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    | || || ||||| || || |||||  |||||||||||||| |||||||||||||||||||    
T  40469594 agcaaattaagtaccttttggaacaaatgtataagcaagccaaaccttagttgcacaccca 40469654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 16257270 - 16257112
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||| | ||||| | | |||| ||||| |||||||||||  | ||||||||    
T  16257270 ctttctatccagaagaagagtacatctcaagggcaacaagaattcatgctgggtacaaaagaagattgagggaaaaagatgagctactcaaaaagaagga 16257171  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcaca 159  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||||    
T  16257170 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcaca 16257112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 27657767 - 27657682
Alignment:
Q  242 tttataaatattatcattgttttt-aaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||||||||||||||| | ||||  | ||||||||| |||| |||||| |||||||||||||||||||||||| ||||||    
T  27657767 tttataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgtttttaatgtcatatgct 27657682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 24641434 - 24641349
Alignment:
Q  242 tttataaatattatcattgttttt-aaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||||||||||||||| | ||||  | ||||||||| |||| |||||| ||||||||||||| |||||||||| ||||||    
T  24641434 tttataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatgtcatatgct 24641349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 12731791 - 12731576
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||    
T  12731791 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaattaagggaaaaggatgagctacttcagaagaaagatgat 12731692  T
Q  105 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12731691 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttgtc 12731592  T
Q  205 tttgtatcttaacctt 220  Q
    ||||||||||||||||    
T  12731591 tttgtatcttaacctt 12731576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 12742384 - 12742169
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||    
T  12742384 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaattaagggaaaaggatgagctacttcagaagaaagatgat 12742285  T
Q  105 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12742284 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttgtc 12742185  T
Q  205 tttgtatcttaacctt 220  Q
    ||||||||||||||||    
T  12742184 tttgtatcttaacctt 12742169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38096371 - 38096156
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | ||||||||||||||||||||||||||| ||||||||    
T  38096371 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagagaaaaggatgagctacttcaaaagaagga 38096272  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  38096271 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 38096172  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  38096171 tgtctttgtatcttaa 38096156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7508585 - 7508365
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||| | | |||||| |||||||||||||||||||||||||||||    
T  7508585 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaacgaagaatgagggaaaaggatgagctacttcagaagaagga 7508486  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  7508485 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 7508386  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  7508385 tgtccttgtatcttaatcttc 7508365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36245943 - 36246163
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||| |||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  36245943 ctttctatccataagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 36246042  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  36246043 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 36246142  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  36246143 tgtccttgtatcttaatcttc 36246163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 51655387 - 51655607
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  51655387 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 51655486  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  51655487 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 51655586  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  51655587 tgtccttgtatcttaatcttc 51655607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35400055 - 35400275
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  35400055 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 35400154  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||  |    
T  35400155 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttg-tttttacttttgttctgtgtagtct 35400253  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  35400254 tatctttgtaccttaaccttca 35400275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35647580 - 35647800
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  35647580 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 35647679  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||  |    
T  35647680 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttg-tttttacttttgttctgtgtagtct 35647778  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  35647779 tatctttgtaccttaaccttca 35647800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 47617449 - 47617668
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  47617449 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 47617548  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||  ||||  |    
T  47617549 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttg--ttttacttttgttctgtgtagtct 47617646  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  47617647 tatctttgtaccttaaccttca 47617668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5834512 - 5834292
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  5834512 ctttctatcctgaagaagagtatatcacaagagctgcaaggattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 5834413  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  5834412 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 5834314  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  5834313 tatctttgtaccttaaccttca 5834292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3172908 - 3172688
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||  ||| | |||||| |||||||||||||||||| | ||||| ||    
T  3172908 ctttctatcctgaagaagagtatatcacaagagctgcaaggattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaaaaagaaaga 3172809  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  3172808 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 3172710  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  3172709 tatctttgtaccttaaccttca 3172688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 4168563 - 4168401
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||    
T  4168563 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggtataaaagaagaatgagagaaaaggatgagctacttaagaagaagga 4168464  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || |||||||| || |||||| |||| |||||||||||||||||||||||||||||    
T  4168463 tgagcaaattaagtatcttttggaacagatgtacaagcaagcccaaccttagttgcacaccca 4168401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 19180247 - 19180085
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||| |||||||||||| || |||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||| ||||||||||    
T  19180247 ctttctatctagaagaagagtatattacaagggctgcaagaattcatgctgggtttaaaagaagaatgagagaaaaggatgagctacttaagaagaagga 19180148  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || ||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  19180147 tgagcaaattaagtatctcttggaacagatgtataagcaagcccaaccttagttgcacaccca 19180085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 5649269 - 5649429
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||  | ||||||||    
T  5649269 ctttctacccagaagaagagtacatcacaagggctgcaagaattcatgctgggtataaaagaagaatgagagaaaaggatgagctactcaataagaagga 5649368  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacc 161  Q
    ||| ||||| |||||||| || |||||| |||| |||||||||||||||||||||||||||    
T  5649369 tgagcagattaagtatcttttggaacagatgtacaagcaagcccaaccttagttgcacacc 5649429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 21864984 - 21864824
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||| | |||||| |||||||||||||||||  | ||||||||    
T  21864984 ctttctatccagaagaagagtacatcacaagggcaacaagaattcatgctgggtataaaagaagaatgagggaaaaggatgagctactcaaaaagaagga 21864885  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacc 161  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||||||    
T  21864884 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcacacc 21864824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 153163 - 153326
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||| ||||||||  ||||| |||| |||||||||||||||   ||||| | | |||||| |||| |||| | |||||||||||||||    
T  153163 ctttctatccagaagatgagtacatttcaaggactgctagaattcatgctgggttgaaaagtagactgagagcaaagaatgaacaacttcagaagaagga 153262  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaa 164  Q
    ||| || || |||||||| || ||||||||||||||||||||| ||||||||||||||||||||    
T  153263 tgagcaaattaagtatctattggaacagttgtataagcaagccaaaccttagttgcacacccaa 153326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 12622689 - 12622847
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||  | ||||| | |||||| |||||||||||||||||  | ||||||||    
T  12622689 ctttctatccagaagaagagtacatctcaagggcaacaagaattcatgctggatacaaaagaagaatgagggaaaaggatgagctactcaaaaagaagga 12622788  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcaca 159  Q
     || || ||||||||||| || |||||| |||| |||||| ||||||||||||||||||    
T  12622789 cgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcaca 12622847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 3172687 - 3172601
Alignment:
Q  242 tttataaatattatcattgttt-ttaaatcatgtgttcta--ttcttttaactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||||||||||||||| | ||||  | |||||||  || |||||||||| |||||||||||||||||||||||| ||||||    
T  3172687 tttataaatattatcattgtttctgaaatattatgttctatttttttttaactctaatgatatttattgtttttaatgtcatatgct 3172601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 35400276 - 35400361
Alignment:
Q  242 tttataaatattatcattgttttt-aaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||||||||||||||| | ||||  | ||||||||| |||| |||||| ||||||||||||| |||||||||| ||||||    
T  35400276 tttataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatgtcatatgct 35400361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 35647801 - 35647886
Alignment:
Q  242 tttataaatattatcattgttttt-aaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||||||||||||||| | ||||  | ||||||||| |||| |||||| ||||||||||||| |||||||||| ||||||    
T  35647801 tttataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatgtcatatgct 35647886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 5834278 - 5834228
Alignment:
Q  274 tgttctattcttttaactctgatgatatttattgtttttaatgtcctatgct 325  Q
    ||||||||| |||||||||| ||||||||||||| |||||||||| ||||||    
T  5834278 tgttctatt-ttttaactctaatgatatttattgattttaatgtcatatgct 5834228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 47617693 - 47617734
Alignment:
Q  284 ttttaactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||| ||||||||||||| |||||||||| ||||||    
T  47617693 ttttaactctaatgatatttattgattttaatgtcatatgct 47617734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 325
Target Start/End: Original strand, 466557 - 466857
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||    
T  466557 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaattaagggaaaaggatgagctacttcagaagaaagatgat 466656  T
Q  105 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||    
T  466657 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttg-tttttacttttgttcttagtagctttctc 466755  T
Q  205 tttgtatcttaaccttcaattggtatcttaaccttcctttataaatattatcattgtttttaaatcatgtgttctattcttttaactctgatgatattta 304  Q
    |||||||||                   ||||||| ||||||||||||||||||||||| ||| |||| |||||||| ||||||| |||||| |||||||    
T  466756 tttgtatct-------------------taacctttctttataaatattatcattgtttataactcatatgttctatacttttaattctgataatattta 466836  T
Q  305 ttgtttttaatgtcctatgct 325  Q
    |||||||||||||| ||||||    
T  466837 ttgtttttaatgtcttatgct 466857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 2715201 - 2715412
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgat 104  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| | |||||| |||||||||||||||||||| ||||||||||||    
T  2715201 ctatccagaagaagagtacatcacaagggctgctagaattcaggctgggtataaaagaagaatgagggaaaaggatgagctacttcaaaagaaggatgat 2715300  T
Q  105 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  2715301 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctgtgtc 2715400  T
Q  205 tttgtatcttaa 216  Q
    ||||||||||||    
T  2715401 tttgtatcttaa 2715412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 8011647 - 8011862
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | ||||||||||||||||||||||||||||||||||||    
T  8011647 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagagaaaaggatgagctacttcagaagaagga 8011746  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  8011747 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 8011846  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  8011847 tgtctttgtatcttaa 8011862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 9086580 - 9086365
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||| | | |||||| |||||||||||||||||||||||||||||    
T  9086580 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaacgaagaatgagggaaaaggatgagctacttcagaagaagga 9086481  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  9086480 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 9086381  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  9086380 tgtctttgtatcttaa 9086365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40051664 - 40051884
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  40051664 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaataatgagggaaaaggatgagctacttcagaagaagga 40051763  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  40051764 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 40051863  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  40051864 tgtccttgtatcttaatcttc 40051884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 26698689 - 26698904
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  26698689 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 26698788  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||     
T  26698789 tgatcagatcaagtatctcttagaatagttgtataagcaagcccaaccttagttgcacatccaactctagcttgttttttacttttgttcttagtagctg 26698888  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  26698889 tgtctttgtatcttaa 26698904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1988891 - 1988671
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | ||||||||||||||||||||||||||||||||||||    
T  1988891 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagagaaaaggatgagctacttcagaagaagga 1988792  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  1988791 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 1988693  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  1988692 tatctttgtaccttaaccttca 1988671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 26399656 - 26399871
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  26399656 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 26399755  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  26399756 tgatcagatcaagtatctcttagaactgttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 26399855  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  26399856 tgtctttgtatcttaa 26399871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 24736076 - 24735856
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  24736076 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 24735977  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  24735976 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 24735877  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  24735876 tgtccttgtatcttaatcttc 24735856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 11097364 - 11097145
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaag-ggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagg 99  Q
    |||||||||||||||||||||||||||| || |||||| |||||||| |||||  ||||||| | |||||| ||||||||||||||||||||||||||||    
T  11097364 ctttctatccagaagaagagtacatcactagtggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagg 11097265  T
Q  100 atgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgtt---ttttacttttgttcttagta 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||    
T  11097264 atgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgtttttttttacttttgttcttagta 11097165  T
Q  197 gctttatctttgtatcttaa 216  Q
    ||| | ||||||||||||||    
T  11097164 gctgtgtctttgtatcttaa 11097145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11006540 - 11006320
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  11006540 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 11006441  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  11006440 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 11006342  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  11006341 tatctttgtaccttaaccttca 11006320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42867181 - 42866961
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  42867181 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 42867082  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  42867081 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 42866983  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  42866982 tatctttgtaccttaaccttca 42866961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 21001968 - 21002131
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||| ||||||||||    
T  21001968 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggtttaaaagaagaatgagagaaaaggatgagctacttaagaagaagga 21002067  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaa 164  Q
    ||| || || ||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  21002068 tgagcaaattaagtatctcttggaacagatgtataagcaagcccaaccttagttgcacacccaa 21002131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 5686885 - 5686723
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||| ||||||||||    
T  5686885 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggtttaaaagaagaatgagagaaaaggatgagctacttaagaagaagga 5686786  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || ||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  5686785 tgagcaaattaagtatctcttggaacagatgtataagcaagcccaaccttagttgcacaccca 5686723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 9434589 - 9434427
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||| ||||||||||    
T  9434589 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggtttaaaagaagaatgagagaaaaggatgagctacttaagaagaagga 9434490  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || ||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  9434489 tgagcaaattaagtatctcttggaacagatgtataagcaagcccaaccttagttgcacaccca 9434427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 6876803 - 6876965
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||    
T  6876803 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggtataaaagaagaatgagagaaaaggatgagctacttaagaagaagga 6876902  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || |||||||| || |||||| |||| |||||||||||||||||||||||||||||    
T  6876903 tgagcaaattaagtatcttttggaacagatgtacaagcaagcccaaccttagttgcacaccca 6876965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 19992976 - 19993143
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    ||||| | ||||||||||||||||||| ||||| ||||||||||    
T  19992976 ctttctatccagaagaagagtacatcacaagggctgctagaattcatgctggattcaaaagaagaatgagagaaaaggatgagttacttaagaagaagga 19993075  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacact 168  Q
    ||| || || ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  19993076 tgagcaaattaagtatctcttggaacagatgtataagcaagcccaaccttagttgcacacccaacact 19993143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 22090532 - 22090372
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||| | |||||| |||||||||||||||||  | ||||||||    
T  22090532 ctttctatccagaagaagagtacatcacaagggcaaccagaattcatgctgggtataaaagaagaatgagggaaaaggatgagctactcaaaaagaagga 22090433  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacc 161  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||||||    
T  22090432 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcacacc 22090372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 4213377 - 4213219
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||||||||||| ||||||| | |||||| ||||| |||||||||||  ||||||||||    
T  4213377 ctttctatccagaagaagagtacattacaagggcatcaagaattcatgctgggtataaaagaagaatgagggaaaatgatgagctactcaagaagaagga 4213278  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcaca 159  Q
    |||  | ||||||||||| || |||||| |||| |||||| ||||||||||||||||||    
T  4213277 tgagaaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcaca 4213219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 17959635 - 17959793
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||| | ||||| | |||||| |||||||||||||||||  | ||||||||    
T  17959635 ctttctatccagaagaagagtacatctcaagggcaacaagaattcatgctgggtacaaaagaagaatgagggaaaaggatgagctactcaaaaagaagga 17959734  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcaca 159  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||||    
T  17959735 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcaca 17959793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 8618743 - 8618587
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||| | ||||  | |||||| |||||||||||||||||  | ||||||||    
T  8618743 ctttctatccagaagaagagtacatctcaagggcaacaagaattcatgctgggtacaaaataagaatgagggaaaaggatgagctactcaaaaagaagga 8618644  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgca 157  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||    
T  8618643 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgca 8618587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 168248 - 168090
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||| | ||||| | | |||| ||||| |||||||||||  | ||||||||    
T  168248 ctttctatccagaagaagagtacatctcaagggcaacaagaattcatgctgggtacaaaagaagattgagggaaaaagatgagctactcaaaaagaagga 168149  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcaca 159  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||||    
T  168148 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcaca 168090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 11006319 - 11006233
Alignment:
Q  242 tttataaatattatcattgttt-ttaaatcatgtgttcta--ttcttttaactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||||||||||||||| | ||||  | |||||||  || |||||||||| ||||||||||||| |||||||||| ||||||    
T  11006319 tttataaatattatcattgtttctgaaatattatgttctatttttttttaactctaatgatatttattgattttaatgtcatatgct 11006233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 15887206 - 15887365
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||| ||||||||||| || ||||   |||||||||  |||||||| |||||||  ||||| | | |||||| | || | || | |||||||||||| ||    
T  15887206 ctttttatccagaagatgattacacttcaagggctgatagaattcaagctgggctgaaaagaagactgagagcacagaaagaacaacttcagaagaatga 15887305  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacac 160  Q
    ||| ||| | || ||||| || |||||| ||| ||||| |||| ||||||||||||||||    
T  15887306 tgagcaggttaaatatctattggaacagatgtctaagctagccaaaccttagttgcacac 15887365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 1988646 - 1988605
Alignment:
Q  284 ttttaactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||| ||||||||||||| |||||||||| ||||||    
T  1988646 ttttaactctaatgatatttattgattttaatgtcatatgct 1988605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 42866936 - 42866895
Alignment:
Q  284 ttttaactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||| ||||||||||||| |||||||||| ||||||    
T  42866936 ttttaactctaatgatatttattgattttaatgtcatatgct 42866895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 9434311 - 9434279
Alignment:
Q  285 tttaactctgatgatatttattgtttttaatgt 317  Q
    |||||||||||||||||||| ||||||||||||    
T  9434311 tttaactctgatgatatttactgtttttaatgt 9434279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 21002246 - 21002278
Alignment:
Q  285 tttaactctgatgatatttattgtttttaatgt 317  Q
    |||||||||||||||||||| ||||||||||||    
T  21002246 tttaactctgatgatatttactgtttttaatgt 21002278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 15994549 - 15994334
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||||||||||||||||| ||||||    
T  15994549 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaattaagggaaaatgatgagctacttcagaagaaagatgat 15994450  T
Q  105 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15994449 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttgtc 15994350  T
Q  205 tttgtatcttaacctt 220  Q
    ||||||||||||||||    
T  15994349 tttgtatcttaacctt 15994334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 31843003 - 31843218
Alignment:
Q  5 ctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgat 104  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||    
T  31843003 ctatccagaagaagagtacatcacaagagctgcaagaattcatgctgggcataaaaggaaattaagggaaaaggatgagctacttcagaagaaagatgat 31843102  T
Q  105 cagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttatc 204  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31843103 cagatcaagtatttcttagaatagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctttgtc 31843202  T
Q  205 tttgtatcttaacctt 220  Q
    ||||||||||||||||    
T  31843203 tttgtatcttaacctt 31843218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 15768374 - 15768589
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | ||||||||||||||||||||||||||||||||||||    
T  15768374 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagagaaaaggatgagctacttcagaagaagga 15768473  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  15768474 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 15768573  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  15768574 tgtctttgtatcttaa 15768589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 37731222 - 37731007
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | ||||||||||||||||||||||||||||||||||||    
T  37731222 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagagaaaaggatgagctacttcagaagaagga 37731123  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  37731122 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 37731023  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  37731022 tgtctttgtatcttaa 37731007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 17616653 - 17616868
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  | ||||| | ||||||||||||||||||||||||||||||||||||    
T  17616653 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatacaaaagaagaatgagagaaaaggatgagctacttcagaagaagga 17616752  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  17616753 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 17616852  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  17616853 tgtctttgtatcttaa 17616868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 17728510 - 17728725
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  | ||||| | ||||||||||||||||||||||||||||||||||||    
T  17728510 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatacaaaagaagaatgagagaaaaggatgagctacttcagaagaagga 17728609  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  17728610 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 17728709  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  17728710 tgtctttgtatcttaa 17728725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 23371543 - 23371758
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  23371543 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 23371642  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  23371643 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 23371742  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  23371743 tgtctttgtatcttaa 23371758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 23706390 - 23706605
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  23706390 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 23706489  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  23706490 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 23706589  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  23706590 tgtctttgtatcttaa 23706605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 30228716 - 30228501
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  30228716 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 30228617  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  30228616 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 30228517  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  30228516 tgtctttgtatcttaa 30228501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 31358127 - 31358342
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  | ||||| | ||||||||||||||||||||||||||||||||||||    
T  31358127 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatacaaaagaagaatgagagaaaaggatgagctacttcagaagaagga 31358226  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  31358227 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 31358326  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  31358327 tgtctttgtatcttaa 31358342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 36583769 - 36583554
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  36583769 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 36583670  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  36583669 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 36583570  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  36583569 tgtctttgtatcttaa 36583554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 42052402 - 42052617
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  42052402 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 42052501  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  42052502 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 42052601  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  42052602 tgtctttgtatcttaa 42052617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 9345574 - 9345789
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||| ||||||||||    
T  9345574 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctactttagaagaagga 9345673  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  9345674 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 9345773  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  9345774 tgtctttgtatcttaa 9345789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 24589324 - 24589109
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | ||||||  ||||||||||||||||||||||||||||    
T  24589324 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgaggtaaaaggatgagctacttcagaagaagga 24589225  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  24589224 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 24589125  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  24589124 tgtctttgtatcttaa 24589109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 24818111 - 24817891
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||| | | |||||| |||||||||||||||||||||||||||||    
T  24818111 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaacgaagaatgagggaaaaggatgagctacttcagaagaagga 24818012  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  24818011 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 24817912  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  24817911 tgtccttgtatcttaatcttc 24817891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 14559328 - 14559113
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  14559328 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 14559229  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||     
T  14559228 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttctcagtagctg 14559129  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  14559128 tgtctttgtatcttaa 14559113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6985332 - 6985552
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  6985332 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 6985431  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  6985432 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 6985531  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  6985532 tgtccttgtatcttaatcttc 6985552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14039631 - 14039851
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  14039631 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 14039730  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  14039731 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 14039830  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  14039831 tgtccttgtatcttaatcttc 14039851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22685037 - 22685257
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  22685037 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 22685136  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  22685137 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 22685236  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  22685237 tgtccttgtatcttaatcttc 22685257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23305880 - 23306100
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  23305880 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 23305979  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  23305980 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 23306079  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  23306080 tgtccttgtatcttaatcttc 23306100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27469595 - 27469815
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  27469595 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 27469694  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  27469695 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 27469794  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  27469795 tgtccttgtatcttaatcttc 27469815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 14448296 - 14448085
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  14448296 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 14448197  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||     
T  14448196 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttctcagtagctg 14448097  T
Q  201 tatctttgtatc 212  Q
    | ||||||||||    
T  14448096 tgtctttgtatc 14448085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 27043479 - 27043264
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  27043479 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 27043380  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||     
T  27043379 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactccaacttgttttttacttttgttcttagtagctg 27043280  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  27043279 tgtctttgtatcttaa 27043264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39492157 - 39491937
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | ||||||  ||||||||||||||||||||||||||||    
T  39492157 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgaggaaaaaggatgagctacttcagaagaagga 39492058  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  39492057 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 39491958  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  39491957 tgtccttgtatcttaatcttc 39491937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35225096 - 35225316
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  35225096 ctttctatcctgaagaagagtatatcacaagagctgcaaggattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 35225195  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||  |    
T  35225196 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttg-tttttacttttgttctgtgtagtct 35225294  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  35225295 tatctttgtaccttaaccttca 35225316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 31447518 - 31447683
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||  |||||| | ||||||||||||||||||||||||||||||||||||    
T  31447518 ctttctatccagaagaagagtacattacaagggctgctagaattcatgctgggtttaaaagaagaatgagagaaaaggatgagctacttcagaagaagga 31447617  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaaca 166  Q
    ||| || || |||||| | || |||||| |||||||||||||||||||||||||||||||||||||    
T  31447618 tgagcaaattaagtatattttggaacagatgtataagcaagcccaaccttagttgcacacccaaca 31447683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 5291837 - 5291675
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||| ||||||||||    
T  5291837 ctttctatccagaagaagagtacattataagggctgcaagaattcatgctgggtttaaaagaagaatgagagaaaaggatgagctacttaagaagaagga 5291738  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || ||||||||||| ||| || ||||||||||||||||||||||||||||||||||    
T  5291737 tgagcaaattaagtatctcttggaatagatgtataagcaagcccaaccttagttgcacaccca 5291675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 27604716 - 27604554
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| | ||||||||||||||||||||||||| ||||||||||    
T  27604716 ctttctatccagaagaagagtacatcacaaggactgcaagaattcatgctgggtttaaaagaagaatgagagaaaaggatgagctacttaagaagaagga 27604617  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || |||||||| || |||||| |||| |||||||||||||||||||||||||||||    
T  27604616 tgagcaaattaagtatcttttggaacagatgtacaagcaagcccaaccttagttgcacaccca 27604554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 40400001 - 40400161
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||    
T  40400001 ctttctatccagaagaagaatacattacaagggctgcaagaattcatgctgggtataaaagaagaatgagagaaaaggatgagctacttaagaagaagga 40400100  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacc 161  Q
    ||| || || |||||||| || |||||| |||| |||||||||||||| ||||||||||||    
T  40400101 tgagcaaattaagtatcttttggaacagatgtacaagcaagcccaaccctagttgcacacc 40400161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 39361282 - 39361443
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||||  ||||||| ||    
T  39361282 ctttctacccagaagaagagtacatcacaagggctgcaagaattcatgctgggtataaaagaagaatgagggaaaaggatgagctactcaagaagaatga 39361381  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccc 162  Q
    ||| || || |||||||| || |||||| |||| ||||||||||||||||||||||||||||    
T  39361382 tgagcaaattaagtatcttttggaacagatgtacaagcaagcccaaccttagttgcacaccc 39361443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 22156086 - 22156244
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||| | ||||| | | |||| ||||| |||||||||||  | ||||||||    
T  22156086 ctttctatccagaagaagagtacatctcaagggcaacaagaattcatgctgggtacaaaagaagattgagggaaaaagatgagctactcaaaaagaagga 22156185  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcaca 159  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||||    
T  22156186 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcaca 22156244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 75 - 220
Target Start/End: Original strand, 36697303 - 36697447
Alignment:
Q  75 aaggatgagctacttcagaagaaggatgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg 174  Q
    ||||||||||||||||||||||||||||| ||||| |    |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  36697303 aaggatgagctacttcagaagaaggatgaacagattagacttctcttagaacagttgaagaagcaagcccaaccttagttgcacacccaactctagcttg 36697402  T
Q  175 ttttttacttttgttcttagtagctttatctttgtatcttaacctt 220  Q
     || |||||||||||||  |||| |||||| ||||| |||||||||    
T  36697403 -ttcttacttttgttctgtgtagttttatccttgtaccttaacctt 36697447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 1110441 - 1110295
Alignment:
Q  18 gagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatgatcagatcaagtatc 117  Q
    ||||||||  ||||| |||| |||||||||||||||   ||||| | | |||||| ||||||||| | |||||||||||||||||| || || |||||||    
T  1110441 gagtacatttcaaggactgctagaattcatgctgggttgaaaagtagactgagagcaaaggatgaacaacttcagaagaaggatgagcaaattaagtatc 1110342  T
Q  118 tcttagaacagttgtataagcaagcccaaccttagttgcacacccaa 164  Q
    | || ||||||||||||||||||||| ||||||||||||||||||||    
T  1110341 tattggaacagttgtataagcaagccaaaccttagttgcacacccaa 1110295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 20796655 - 20796818
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||| ||||||||  ||||  |||  |||||||| || |||   ||||| | | |||||| ||||||||| | |||||||||||||||    
T  20796655 ctttctatccagaagatgagtacatttcaagaactgttagaattcaagccgggttgaaaagaagactgagagcaaaggatgaacaacttcagaagaagga 20796754  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaa 164  Q
    ||| ||||| || ||||| || |||||| ||||||||| |||| ||||||||||||||||||||    
T  20796755 tgagcagattaaatatcttttggaacagatgtataagctagccaaaccttagttgcacacccaa 20796818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36697208 - 36697271
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaa 64  Q
    ||||||||||||| | ||| ||||||||||| |||||||||||| ||||||||||||| |||||    
T  36697208 ctttctatccagaggcagaatacatcacaagagctgcaagaatttatgctgggcataagaggaa 36697271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 36697449 - 36697535
Alignment:
Q  241 ctttataaatattatcattgttt-ttaaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    ||||||||||||||||||||||| | ||||  | || ||| ||||||| |||||| ||||||||||||| |||||||||| ||||||    
T  36697449 ctttataaatattatcattgtttctgaaatattatgctcttttcttttaaactctaatgatatttattgattttaatgtcatatgct 36697535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 35225330 - 35225380
Alignment:
Q  274 tgttctattcttttaactctgatgatatttattgtttttaatgtcctatgct 325  Q
    ||||||||| |||||||||| ||||||||||||| |||||||||| ||||||    
T  35225330 tgttctatt-ttttaactctaatgatatttattgattttaatgtcatatgct 35225380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 23371828 - 23371860
Alignment:
Q  285 tttaactctgatgatatttattgtttttaatgt 317  Q
    |||||||||||||||||||| ||||||||||||    
T  23371828 tttaactctgatgatatttactgtttttaatgt 23371860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 12856261 - 12856046
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| | |||||| |||||||||||||||||||||||||||||    
T  12856261 ctttctatccagaagaagagtacatcacaagggctgctagaattcaggctgggtataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 12856162  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12856161 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 12856062  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  12856061 tgtctttgtatcttaa 12856046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 26866104 - 26865889
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  26866104 ctttctatccagaagaagagtacatcacaagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 26866005  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26866004 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagcta 26865905  T
Q  201 tatctttgtatcttaa 216  Q
    | || |||||||||||    
T  26865904 tgtccttgtatcttaa 26865889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 3662656 - 3662441
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  3662656 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 3662557  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  3662556 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 3662457  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  3662456 tgtctttgtatcttaa 3662441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 25789040 - 25788825
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  25789040 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 25788941  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  25788940 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 25788841  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  25788840 tgtctttgtatcttaa 25788825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27343039 - 27342819
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  27343039 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 27342940  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  27342939 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 27342840  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  27342839 tgtccttgtatcttaatcttc 27342819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27403779 - 27403559
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  27403779 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 27403680  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  27403679 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 27403580  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  27403579 tgtccttgtatcttaatcttc 27403559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16931706 - 16931486
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||| | | |||||| |||||||||||||||||||||||||||||    
T  16931706 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaacgaagaatgagggaaaaggatgagctacttcagaagaagga 16931607  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  16931606 tgatcagatcaagtatctcttagaacagtngtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 16931507  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  16931506 tgtccttgtatcttaatcttc 16931486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 12726329 - 12726544
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  12726329 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 12726428  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  12726429 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 12726528  T
Q  201 tatctttgtatcttaa 216  Q
    | || |||||||||||    
T  12726529 tgtccttgtatcttaa 12726544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 17983630 - 17983849
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  17983630 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 17983729  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg----ttttttacttttgttcttagta 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    ||||||||||||||||||||||    
T  17983730 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttttttacttttgttcttagta 17983829  T
Q  197 gctttatctttgtatcttaa 216  Q
    ||| | ||||||||||||||    
T  17983830 gctgtgtctttgtatcttaa 17983849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26026731 - 26026511
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  26026731 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 26026632  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  26026631 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtagctg 26026532  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  26026531 tgtccttgtatcttaatcttc 26026511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 9122025 - 9122188
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||| ||||||||||    
T  9122025 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggtttaaaagaagaatgagagaaaaggatgagctacttaagaagaagga 9122124  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaa 164  Q
    ||| || || ||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  9122125 tgagcaaattaagtatctcttggaacagatgtataagcaagcccaaccttagttgcacacccaa 9122188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 27374095 - 27373928
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||    
T  27374095 ctttctatctagaagaagagtatatcacaagggctgcaagaattcatgctgggtataaaagaagaatgagagaaaaggatgagctacttcagaagaagga 27373996  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacact 168  Q
    |||||| || ||||| || || |||||| |||||||||||||||||||||||||||||||||||||||    
T  27373995 tgatcaaattaagtaccttttggaacagatgtataagcaagcccaaccttagttgcacacccaacact 27373928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 27464448 - 27464281
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||    
T  27464448 ctttctatctagaagaagagtatatcacaagggctgcaagaattcatgctgggtataaaagaagaatgagagaaaaggatgagctacttcagaagaagga 27464349  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacact 168  Q
    |||||| || ||||| || || |||||| |||||||||||||||||||||||||||||||||||||||    
T  27464348 tgatcaaattaagtaccttttggaacagatgtataagcaagcccaaccttagttgcacacccaacact 27464281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 25590522 - 25590360
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||| |  |||||||| |||||||| || ||| ||||||||||    
T  25590522 ctttctatccagaagaagagtacatcacaagggctgcaagaatacatgctgggtttaaaagaaggatgagagagaaggatgaacttcttaagaagaagga 25590423  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || ||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  25590422 tgagcaaattaagtacctcttagaacagatgtataagcaagcccaaccttagttgcacaccca 25590360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 75 - 220
Target Start/End: Complemental strand, 27385653 - 27385509
Alignment:
Q  75 aaggatgagctacttcagaagaaggatgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg 174  Q
    ||||||||||||||||||||||||||||| ||||| |    |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  27385653 aaggatgagctacttcagaagaaggatgaacagattagacttctcttagaacagttgaagaagcaagcccaaccttagttgcacacccaactctagcttg 27385554  T
Q  175 ttttttacttttgttcttagtagctttatctttgtatcttaacctt 220  Q
    | |||||||||||||||  |||| |||||| ||||| |||||||||    
T  27385553 t-ttttacttttgttctgtgtagttttatccttgtaccttaacctt 27385509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 75 - 220
Target Start/End: Complemental strand, 27476066 - 27475922
Alignment:
Q  75 aaggatgagctacttcagaagaaggatgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg 174  Q
    ||||||||||||||||||||||||||||| ||||| |    |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  27476066 aaggatgagctacttcagaagaaggatgaacagattagacttctcttagaacagttgaagaagcaagcccaaccttagttgcacacccaactctagcttg 27475967  T
Q  175 ttttttacttttgttcttagtagctttatctttgtatcttaacctt 220  Q
    | |||||||||||||||  |||| |||||| ||||| |||||||||    
T  27475966 t-ttttacttttgttctgtgtagttttatccttgtaccttaacctt 27475922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 34816667 - 34816825
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||| | ||||| | | |||| ||||| |||||||||||  | ||||||||    
T  34816667 ctttctatccagaagaagagtacatctcaagggcaacaagaattcatgctgggtacaaaagaagattgagggaaaaagatgagctactcaaaaagaagga 34816766  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcaca 159  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||||    
T  34816767 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcaca 34816825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 75 - 220
Target Start/End: Complemental strand, 4632127 - 4631983
Alignment:
Q  75 aaggatgagctacttcagaagaaggatgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg 174  Q
    ||||||||||||||||||||||||||||| ||||| |    |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  4632127 aaggatgagctacttcagaagaaggatgaacagattagacttctcttagaacagttgaagaagcaagcccaaccttagttgcacacccaactctagcttg 4632028  T
Q  175 ttttttacttttgttcttagtagctttatctttgtatcttaacctt 220  Q
     || |||||||||||||  |||| |||||| ||||| |||||||||    
T  4632027 -ttcttacttttgttctgtgtagttttatccttgtaccttaacctt 4631983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 75 - 220
Target Start/End: Original strand, 32310650 - 32310794
Alignment:
Q  75 aaggatgagctacttcagaagaaggatgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg 174  Q
    ||||||||||||||||||||||||||||| ||||| |    |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  32310650 aaggatgagctacttcagaagaaggatgaacagattagacttctcttagaacagttgaagaagcaagcccaaccttagttgcacacccaactctagcttg 32310749  T
Q  175 ttttttacttttgttcttagtagctttatctttgtatcttaacctt 220  Q
     || |||||||||||||  |||| |||||| ||||| |||||||||    
T  32310750 -ttcttacttttgttctgtgtagttttatccttgtaccttaacctt 32310794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 32971370 - 32971526
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||| | ||||| | | |||| ||||| |||||||||||  | ||||||||    
T  32971370 ctttctatccagaagaagagtacatctcaagggcaacaagaattcatgctgggtacaaaagaagattgagggaaaatgatgagctactcaaaaagaagga 32971469  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgca 157  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||    
T  32971470 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgca 32971526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 7669375 - 7669466
Alignment:
Q  72 gaaaaggatgagctacttcagaagaaggatgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    |||||||||||||||||  ||||||||||||| || ||||||||||| || |||||| |||| |||||||||||||||||||||||||||||    
T  7669375 gaaaaggatgagctactcaagaagaaggatgagcaaatcaagtatcttttggaacagatgtacaagcaagcccaaccttagttgcacaccca 7669466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 27385748 - 27385646
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||| |||||  | ||||| ||||| || |||||||||||||||||    
T  27385748 ctttctatccagaggcagaatacatcacaagagctgcaagaattcatgctgggcataagaggaagttaagagagaaggaagaactacttcagaagaagga 27385649  T
Q  101 tga 103  Q
    |||    
T  27385648 tga 27385646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 27476161 - 27476059
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||| |||||  | ||||| ||||| || |||||||||||||||||    
T  27476161 ctttctatccagaggcagaatacatcacaagagctgcaagaattcatgctgggcataagaggaagttaagagagaaggaagaactacttcagaagaagga 27476062  T
Q  101 tga 103  Q
    |||    
T  27476061 tga 27476059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 4632222 - 4632120
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||| | ||| ||||||||||| |||||||||||| ||||||||||||| |||||  | ||||| ||||| || |||||||||||||||||    
T  4632222 ctttctatccagaggcagaatacatcacaagagctgcaagaatttatgctgggcataagaggaagttaagagagaaggaagaactacttcagaagaagga 4632123  T
Q  101 tga 103  Q
    |||    
T  4632122 tga 4632120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 12359457 - 12359298
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||| || ||||   |||||||||  |||||||| || ||||  ||||| | | |||||| |||| ||||   |||||||||||||||    
T  12359457 ctttctatccagaagatgattacacttcaagggctgatagaattcaagcagggctgaaaagcagattgagagcaaagaatgaagaacttcagaagaagga 12359358  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacac 160  Q
    ||||||||| || ||||| || |||||| ||| ||||| |||| ||||||||||||||||    
T  12359357 tgatcagattaaatatctattggaacagatgtctaagctagccaaaccttagttgcacac 12359298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32310555 - 32310618
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaa 64  Q
    ||||||||||||| | ||| ||||||||||| |||||||||||| ||||||||||||| |||||    
T  32310555 ctttctatccagaggcagaatacatcacaagagctgcaagaatttatgctgggcataagaggaa 32310618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 4631981 - 4631895
Alignment:
Q  241 ctttataaatattatcattgttt-ttaaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    ||||||||||||||||||||||| | ||||  | || ||| ||||||| |||||| ||||||||||||| |||||||||| ||||||    
T  4631981 ctttataaatattatcattgtttctgaaatattatgctcttttcttttaaactctaatgatatttattgattttaatgtcatatgct 4631895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 32310796 - 32310882
Alignment:
Q  241 ctttataaatattatcattgttt-ttaaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    ||||||||||||||||||||||| | ||||  | || ||| ||||||| |||||| ||||||||||||| |||||||||| ||||||    
T  32310796 ctttataaatattatcattgtttctgaaatattatgctcttttcttttaaactctaatgatatttattgattttaatgtcatatgct 32310882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 27385507 - 27385421
Alignment:
Q  241 ctttataaatattatcattgttttt-aaatcatgtgttctattcttttaa-ctctgatgatatttattgtttttaatgtcctatgct 325  Q
    ||||||||||||||||| ||||| | ||||  | || ||| ||||||||| |||| ||||||||||||| |||||||||| ||||||    
T  27385507 ctttataaatattatcaatgtttctgaaatattatgctcttttcttttaaactctaatgatatttattgattttaatgtcatatgct 27385421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 27475920 - 27475834
Alignment:
Q  241 ctttataaatattatcattgttttt-aaatcatgtgttctattcttttaa-ctctgatgatatttattgtttttaatgtcctatgct 325  Q
    ||||||||||||||||| ||||| | ||||  | || ||| ||||||||| |||| ||||||||||||| |||||||||| ||||||    
T  27475920 ctttataaatattatcaatgtttctgaaatattatgctcttttcttttaaactctaatgatatttattgattttaatgtcatatgct 27475834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 209099 - 209314
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  209099 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 209198  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  209199 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 209298  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  209299 tgtctttgtatcttaa 209314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 722722 - 722937
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  722722 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 722821  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  722822 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 722921  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  722922 tgtctttgtatcttaa 722937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 29078054 - 29077839
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  29078054 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 29077955  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  29077954 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 29077855  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  29077854 tgtctttgtatcttaa 29077839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 32087215 - 32087430
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  32087215 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 32087314  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  32087315 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 32087414  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  32087415 tgtctttgtatcttaa 32087430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 15766093 - 15766311
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| | |||||| |||||| ||||||||||| ||||||||||    
T  15766093 ctttctatccagaagaagagtacatcacaagggctgctagaattcaggctgggtataaaagaagaatgagggaaaagaatgagctactttagaagaagga 15766192  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg---ttttttacttttgttcttagtag 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  15766193 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgtttttttttacttttgttcttagtag 15766292  T
Q  198 ctttatctttgtatcttaa 216  Q
    |||| ||||||||||||||    
T  15766293 ctttgtctttgtatcttaa 15766311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 15790230 - 15790448
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| | |||||| |||||||||||||||||| ||||||||||    
T  15790230 ctttctatccagaagaagagtacatcacaagggctgctagaattcaggctgggtataaaagaagaatgagggaaaaggatgagctactttagaagaagga 15790329  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg---ttttttacttttgttcttagtag 197  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  15790330 tgatcggatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgtttttttttacttttgttcttagtag 15790429  T
Q  198 ctttatctttgtatcttaa 216  Q
    |||| ||||||||||||||    
T  15790430 ctttgtctttgtatcttaa 15790448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 243156 - 242942
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  243156 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 243057  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||     
T  243056 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttac-tttgttcttagtagctg 242958  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  242957 tgtctttgtatcttaa 242942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 796526 - 796312
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||||||    
T  796526 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatataaaagaagaatgagggaaaaggatgagctacttcagaagaagga 796427  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||     
T  796426 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttac-tttgttcttagtagctg 796328  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  796327 tgtctttgtatcttaa 796312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 36294273 - 36294058
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | ||||||||||||||||||||||||||||||||||||    
T  36294273 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagagaaaaggatgagctacttcagaagaagga 36294174  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||     
T  36294173 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttctcagtagctg 36294074  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  36294073 tgtctttgtatcttaa 36294058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3358151 - 3358371
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  3358151 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 3358250  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||     
T  3358251 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttcgtatctg 3358350  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  3358351 tgtccttgtatcttaatcttc 3358371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9342478 - 9342258
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||||||||||||    
T  9342478 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcagaagaagga 9342379  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||     
T  9342378 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcatattttttacttttgttcttcgtagctg 9342279  T
Q  201 tatctttgtatcttaaccttc 221  Q
    | || ||||||||||| ||||    
T  9342278 tgtccttgtatcttaatcttc 9342258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13687510 - 13687730
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  13687510 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 13687609  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||  |    
T  13687610 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttg-tttttacttttgttctgtgtagtct 13687708  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  13687709 tatctttgtaccttaaccttca 13687730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36079278 - 36079058
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  36079278 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 36079179  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||  |    
T  36079178 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttgt-ttttacttttgttctgtgtagtct 36079080  T
Q  201 tatctttgtatcttaaccttca 222  Q
    |||||||||| |||||||||||    
T  36079079 tatctttgtaccttaaccttca 36079058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 26112630 - 26112468
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| || |||||||    
T  26112630 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggtataaaagaagaatgagagaaaaggatgagctacttaagcagaagga 26112531  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || |||||||| || |||||| |||| |||||||||||||||||||||||||||||    
T  26112530 tgaacaaattaagtatcttttggaacagatgtacaagcaagcccaaccttagttgcacaccca 26112468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 19130100 - 19129938
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | ||||||||||||||||||||||||| ||||||||||    
T  19130100 ctttctatccagaagaagagtacattacaagggctgcaagaattcatgttgggtttaaaagaagaatgagagaaaaggatgagctacttaagaagaagga 19130001  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    | | || || |||||||| || |||||| |||| |||||||||||||||||||||||||||||    
T  19130000 tcagcaaattaagtatcttttggaacagatgtacaagcaagcccaaccttagttgcacaccca 19129938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 6152450 - 6152292
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||| |||||||||||||||| |||||||  ||||||||||||||||| | ||||| | | |||| |||||||||||||||||  | |||||| |    
T  6152450 ctttctatcgagaagaagagtacatctcaagggcaacaagaattcatgctgggtacaaaagaagattgagggaaaaggatgagctactcaaaaagaagaa 6152351  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcaca 159  Q
    ||| || ||||||||||| || |||||| |||| |||||| ||||||||||||||||||    
T  6152350 tgagcaaatcaagtatctattggaacagatgtacaagcaaacccaaccttagttgcaca 6152292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 75 - 220
Target Start/End: Complemental strand, 44482396 - 44482252
Alignment:
Q  75 aaggatgagctacttcagaagaaggatgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg 174  Q
    ||||||||||||||||||||||||||||| ||||| |    ||||||||||||| || | ||||||||||||||||||||||||||||||| ||||||||    
T  44482396 aaggatgagctacttcagaagaaggatgaacagattagacttctcttagaacagctgaagaagcaagcccaaccttagttgcacacccaactctagcttg 44482297  T
Q  175 ttttttacttttgttcttagtagctttatctttgtatcttaacctt 220  Q
     || |||||||||||||  |||| |||||| ||||| |||||||||    
T  44482296 -ttcttacttttgttctgtgtagttttatccttgtaccttaacctt 44482252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 44482491 - 44482389
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||| | ||| ||||||||||| |||||||||||| ||||||||||||| |||||  | ||||| ||||| || |||||||||||||||||    
T  44482491 ctttctatccagaggcagaatacatcacaagagctgcaagaatttatgctgggcataagaggaagttaagagagaaggaagaactacttcagaagaagga 44482392  T
Q  101 tga 103  Q
    |||    
T  44482391 tga 44482389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 19226293 - 19226134
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||| || ||||   |||||||||  |||||||| |||||||  ||||| | | |||||| | || | || | |||||||||||||||    
T  19226293 ctttctatccagaagatgattacacttcaagggctgatagaattcaagctgggctgaaaagaagactgagagcacagaaagaacaacttcagaagaagga 19226194  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacac 160  Q
    ||| ||||| || ||||| || |||||| ||| ||||| |||| ||||||||||||||||    
T  19226193 tgagcagattaaatatctattggaacagatgtctaagctagccaaaccttagttgcacac 19226134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 30324174 - 30324333
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||| ||||||||||| || ||||   |||||||||  |||||||| |||||||  ||||| | | |||||| | ||  ||| | |||||||||||||||    
T  30324174 ctttttatccagaagatgattacacttcaagggctgatagaattcaagctgggctgaaaagaagagtgagagcacagactgaacaacttcagaagaagga 30324273  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacac 160  Q
    ||| ||||| || ||||| || |||||| ||| ||||| |||| ||||||||||||||||    
T  30324274 tgagcagattaaatatcttttggaacagatgtctaagctagccaaaccttagttgcacac 30324333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 13687731 - 13687816
Alignment:
Q  242 tttataaatattatcattgttttt-aaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||||||||||||||| | ||||  | ||||||||| |||| |||||| ||||||||||||| |||||||||| ||||||    
T  13687731 tttataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatgtcatatgct 13687816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 44482250 - 44482164
Alignment:
Q  241 ctttataaatattatcattgttt-ttaaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    ||||||||||||||||||||||| | ||||  | || ||| ||||||| |||||| ||||||||||||| |||||||||| ||||||    
T  44482250 ctttataaatattatcattgtttctgaaatattatgctcttttcttttaaactctaatgatatttattgattttaatgtcatatgct 44482164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 36079033 - 36078992
Alignment:
Q  284 ttttaactctgatgatatttattgtttttaatgtcctatgct 325  Q
    |||||||||| ||||||||||||| |||||||||| ||||||    
T  36079033 ttttaactctaatgatatttattgattttaatgtcatatgct 36078992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 32477 - 32262
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||| | | |||||| |||||||||||||||||||| ||||||||    
T  32477 ctttctatccagaagaagagtacatcactagggctgctagaattcaggctggatttaaacgaagaatgagggaaaaggatgagctacttcaaaagaagga 32378  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  32377 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaactctagcttgttttttacttttgttcttagtagctg 32278  T
Q  201 tatctttgtatcttaa 216  Q
    | ||||||||||||||    
T  32277 tgtctttgtatcttaa 32262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0906 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: scaffold0906
Description:

Target: scaffold0906; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 3 - 326
Target Start/End: Original strand, 3438 - 3749
Alignment:
Q  3 ttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaaggatg 102  Q
    ||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||| || ||| | || |||||||||||||||||||||||||||||||    
T  3438 ttctacccagaggaagaatacatcacaagagctgcaagaattcatgctgggcataagagaaaattaagggaaaaggatgagctacttcagaagaaggatg 3537  T
Q  103 atcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagc------ttgttttttacttttgttcttagta 196  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||      || ||||||||||||||||||||||    
T  3538 atcagatcagatatctcttagagcagttgtataagcaagcccaaccttagttgcacacccaattctagctttttttttttttttacttttgttcttagta 3637  T
Q  197 gctttatctttgtatcttaaccttcaattggtatcttaaccttcctttataaatattatcattgttt-ttaaatcatgtgttctattcttttaactctga 295  Q
    |||||||| ||||||||||||            ||||       ||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||    
T  3638 gctttatccttgtatcttaac------------tctt-------ctttataaatattatcattgtttattaaatcatatgttctatacttttaattctga 3718  T
Q  296 tgatatttattgtttttaatgtcctatgctt 326  Q
    ||||||||||||||||||||||| |||||||    
T  3719 tgatatttattgtttttaatgtcttatgctt 3749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 46494 - 46799
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||| ||||||| ||    
T  46494 ctttctatcctgaagaagagtatatcacaagagctgcaagaattcatgctgggcatgtaagaagaatgagggaaaaggatgagctacttaagaagaaaga 46593  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttgttttttacttttgttcttagtagctt 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||  |    
T  46594 tgaacagatcaagtatctcttagaacagctgtataagcaagcccaaccttagttgcacacccaactctagcttg-tttttacttttgttctgtgtagtct 46692  T
Q  201 tatctttgtatcttaaccttcaattggtatcttaaccttcctttataaatattatcattgttt-ttaaatcatgtgttctattcttttaactctgatgat 299  Q
    |||||||||| |||||||||||                   |||||||||||||||||||||| | ||||  | ||||||||| |||||||||| |||||    
T  46693 tatctttgtaccttaaccttca-------------------tttataaatattatcattgtttctgaaatattatgttctatttttttaactctaatgat 46773  T
Q  300 atttattgtttttaatgtcctatgct 325  Q
    |||||||| |||||||||| ||||||    
T  46774 atttattgattttaatgtcatatgct 46799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1216 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold1216
Description:

Target: scaffold1216; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 429 - 267
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||   |||||| | ||||||||||||||||||||||||||||||||||||    
T  429 ctttctatccataagaagagtacattacaagggctgctagaattcatgctggatttaaaagaagaatgagagaaaaggatgagctacttcagaagaagga 330  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacaccca 163  Q
    ||| || || ||||| || || |||||  |||||||||||||| |||||||||||||||||||    
T  329 tgagcaaattaagtaccttttggaacaaatgtataagcaagccaaaccttagttgcacaccca 267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 52486 - 52649
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||| ||||||||  ||||| |||| |||||||||||||||   ||||| | | |||||| ||||||||| | |||||||||||||||    
T  52486 ctttctatccagaagatgagtacatttcaaggactgctagaattcatgctgggttgaaaagtagactgagagcaaaggatgaacaacttcagaagaagga 52585  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaa 164  Q
    ||| || || |||||||| || |||||| |||||||||||| | ||||||||||||||||||||    
T  52586 tgagcaaattaagtatctattggaacagatgtataagcaagtcaaaccttagttgcacacccaa 52649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 75 - 220
Target Start/End: Complemental strand, 2535 - 2391
Alignment:
Q  75 aaggatgagctacttcagaagaaggatgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg 174  Q
    ||||||||||||||||||||||||||||| ||||| |    |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  2535 aaggatgagctacttcagaagaaggatgaacagattagacttctcttagaacagttgaagaagcaagcccaaccttagttgcacacccaactctagcttg 2436  T
Q  175 ttttttacttttgttcttagtagctttatctttgtatcttaacctt 220  Q
     || |||||||||||||  ||   |||||| ||||| |||||||||    
T  2435 -ttcttacttttgttctgtgttagtttatccttgtaccttaacctt 2391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 2630 - 2528
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    ||||||||||||| | ||| ||||||||||| |||||||||||| ||||||||||||| |||||  | ||||| ||||| || |||||||||||||||||    
T  2630 ctttctatccagaggcagaatacatcacaagagctgcaagaatttatgctgggcataagaggaagttaagagagaaggaagaactacttcagaagaagga 2531  T
Q  101 tga 103  Q
    |||    
T  2530 tga 2528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 2399 - 2303
Alignment:
Q  231 cttaaccttcctttataaatattatcattgttt-ttaaatcatgtgttctattctttt-aactctgatgatatttattgtttttaatgtcctatgct 325  Q
    ||||||||| ||||||||||||||||||||||| | ||||  | || ||| ||||||| |||||| ||||||||||||| |||||||||| ||||||    
T  2399 cttaacctttctttataaatattatcattgtttctgaaatattatgctcttttcttttaaactctaatgatatttattgattttaatgtcatatgct 2303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 23892 - 23787
Alignment:
Q  75 aaggatgagctacttcagaagaaggatgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaacactagcttg 174  Q
    ||||||||||||||||||||||||||||| ||||| |   |||||||||| |||||  | || ||||||||||||||||||||||||||| |||||||||    
T  23892 aaggatgagctacttcagaagaaggatgaacagattagacatctcttagagcagttaaagaaacaagcccaaccttagttgcacacccaatactagcttg 23793  T
Q  175 tttttt 180  Q
    ||||||    
T  23792 tttttt 23787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 23737 - 23666
Alignment:
Q  241 ctttataaatattatcattgttt-ttaaatcatgtgttctattcttttaactctgatgatatttattgtttt 311  Q
    ||||||||||||||||||||||| ||||||||| |||||||| ||||||  |||||| ||||||||||||||    
T  23737 ctttataaatattatcattgtttgttaaatcatatgttctatacttttacttctgataatatttattgtttt 23666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0398 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0398
Description:

Target: scaffold0398; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 3253 - 3416
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||| ||||||||||| || |||||  |||| ||||  |||||||| |||||||  ||||| | | | |||| | || |||| | |||||||||||||||    
T  3253 ctttttatccagaagatgattacatttcaagagctgatagaattcaagctgggctgaaaagaagactaagagcacagaatgaacaacttcagaagaagga 3352  T
Q  101 tgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaa 164  Q
    ||| ||||| || ||||| || |||||| ||||||||| |||| ||||||||||||||||||||    
T  3353 tgagcagattaaatatctattggaacagatgtataagctagccaaaccttagttgcacacccaa 3416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0398; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 11593 - 11671
Alignment:
Q  86 acttcagaagaaggatgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaa 164  Q
    |||||||||||||||||| ||||| || ||||| || |||||| ||||||||| |||| ||||||||||||||||||||    
T  11593 acttcagaagaaggatgagcagattaaatatctattggaacagatgtataagctagccaaaccttagttgcacacccaa 11671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0747 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0747
Description:

Target: scaffold0747; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3619 - 3567
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctggg 53  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  3619 ctttctatccagaagaagagtacatcacaagagctgcaagaatacatgctggg 3567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1002 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold1002
Description:

Target: scaffold1002; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 2863 - 2952
Alignment:
Q  75 aaggatgagctacttcagaagaaggatgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacacccaa 164  Q
    |||||||| | |||||||||||||||||| ||||| || |||||  | |||||| ||| ||||| |||| ||||||||||||||||||||    
T  2863 aaggatgaacaacttcagaagaaggatgagcagattaaatatctactggaacagatgtctaagctagccaaaccttagttgcacacccaa 2952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1002; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 2768 - 2870
Alignment:
Q  1 ctttctatccagaagaagagtacatcacaagggctgcaagaattcatgctgggcataaaaggaaaatgagagaaaaggatgagctacttcagaagaagga 100  Q
    |||||||||||||||| || ||||   |||||||||  |||||||| |||||||  ||||| | | ||| || |||| |||| | |||||||||||||||    
T  2768 ctttctatccagaagatgattacacttcaagggctgatagaattcaagctgggctgaaaagaagactgaaagcaaagaatgatcaacttcagaagaagga 2867  T
Q  101 tga 103  Q
    |||    
T  2868 tga 2870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 23832 - 23758
Alignment:
Q  86 acttcagaagaaggatgatcagatcaagtatctcttagaacagttgtataagcaagcccaaccttagttgcacac 160  Q
    |||||| ||||||||||| ||||| || ||||| || |||||| ||| ||||| |||| ||||||||||||||||    
T  23832 acttcaaaagaaggatgagcagattaaatatcttttggaacagatgtctaagctagccaaaccttagttgcacac 23758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University